Browse Element(s) Details


Os.8036.1.S1_at

Description gb:AK071944.1
DB_XREF= gi:32981967
TID=Os.8036.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8036 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-115-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013087B05, full insert sequence.
FL= gb:AK105270.1 gb:AK071944.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g250704/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25020OsAffx.25936.1.S1_s_at9/115+14405762..14408800transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25020OsAffx.25936.7.S1_s_at8/115+14405762..14408800transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25020OsAffx.25936.2.S1_x_at6/115+14405762..14408800transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25020OsAffx.25936.5.S1_x_at2/115+14405762..14408800transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25040Os.28539.1.S1_at11/115+14411311..14416247expressed protein
LOC_Os05g25040OsAffx.24095.1.A1_at11/115+14411311..14416247expressed protein
LOC_Os05g25040Os.10623.1.S1_x_at1/115+14411311..14416247expressed protein
LOC_Os05g25040OsAffx.3012.1.S1_at1/115+14411311..14416247expressed protein
LOC_Os05g25040Os.51711.1.S1_at1/115+14411311..14416247expressed protein
LOC_Os05g25030NANA5+14415880..14416254hypothetical protein
LOC_Os05g25050OsAffx.4421.1.S1_at11/115+14417561..14419035hypothetical protein
LOC_Os05g25050OsAffx.28941.1.S1_x_at1/115+14417561..14419035hypothetical protein
LOC_Os05g25060OsAffx.14819.1.S1_at11/115+14422340..14428742expressed protein
LOC_Os05g25070Os.8036.1.S1_at4/115+14432264..14436147expressed protein
LOC_Os05g25070OsAffx.15286.1.S1_at2/115+14432264..14436147expressed protein
LOC_Os05g25080Os.27034.1.A1_at8/115+14442907..14446172transposon protein, putative, Mutator sub-class, expressed
LOC_Os05g25090OsAffx.4422.1.S1_at11/115+14446088..14447149hypothetical protein
LOC_Os05g25100OsAffx.31813.1.S1_x_at2/115+14457242..14465185retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25100Os.51869.1.S1_at2/115+14457242..14465185retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8036.1.S1_at--1147--2311Chr05:14435876..14435900 (25 bp)
AAAGTCGCTTTCTCGGACTTCATCT
LOC_Os05g25070
Os.8036.1.S1_at--328--7791Chr05:14435958..14435982 (25 bp)
GGTGCGATACAATCCGGATGCCATT
LOC_Os05g25070
Os.8036.1.S1_at--451--10711Chr05:14436009..14436033 (25 bp)
TTGCTGTGCCCTGTATGTTAGTCTC
LOC_Os05g25070
Os.8036.1.S1_at--1150--7151Chr05:14436029..14436053 (25 bp)
GTCTCTGATGAGTTGTGTCCTGGAA
LOC_Os05g25070
Os.8036.1.S1_at--1072--1971Chr05:14436128..14436152 (25 bp)
ACTGCATCATCGATTTGGTACTGGC
NONE
Os.8036.1.S1_at--1083--11NONE
ATTGGCTTAGTATCGCCCGATGTCA
NONE
Os.8036.1.S1_at--373--2471NONE
AACACATTTTGATGCCAACCTTCGC
NONE
Os.8036.1.S1_at--576--2031NONE
ACTATCCTGGGCATTTCTACGAGAT
NONE
Os.8036.1.S1_at--298--6351NONE
GATGCGCAATCCAATCGGTAGCCTT
NONE
Os.8036.1.S1_at--664--9811NONE
TTAAGGGTAGTCTCCTGCGGAACTA
NONE
Os.8036.1.S1_at--897--3151NONE
AATTCCCTCACTAAACAGGTCTCTG
NONE
Target Sequence 
AAAGTCGCTTTCTCGGACTTCATCTAAGCAANAGATCAAGCCCGGCACCACCAACCATGCTGAAGATTAAAAGGTGGTTA
GTGGTGCGATACAATCCGGATGCCATTGCAAATGTAAAACCAAAGCTGCGCCGTTGCTGTGCCCTGTATGTTAGTCTCTG
ATGAGTTGTGTCCTGGAAATGTGCGGACAAATGATGTTCATGCCTGAGATGTTTGTATGATCCGGTGTAACTTACACAGT
ATTTATAATTTTACTGCATCATCGATTTGGTACTGGCAAGGTGTGCATGCAATTGGCTTAGTATCGCCCGATGTCAATTA
GACTCTGAAACGAACACATTTTGATGCCAACCTTCGCGACTATCCTGGGCATTTCTACGAGATGCGCAATCCAATCGGTA
GCCTTCTGCGGAAGAACCAATTACCTGGTATTGGTTTGAATTGACCAAGGTCCAATTTTAAGGGTAGTCTCCTGCGGAAC
TACAGTACTGTGGAAATATCTTGTGTGTTACCATTCTTCTTGAAAGGAATCCTACAACCCCGTAAACGCGCCTTACACAA
ACAACCAAATTCCCTCACTAAACAGGTCTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8036.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis