Browse Element(s) Details


OsAffx.4421.1.S1_at

Description tigr:9633.m02248
TID=OsAffx.4421.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2505011/11hypothetical protein
LOC_Os02g187001/11multidrug resistance associated protein 2, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25010Os.10827.1.S1_x_at10/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010Os.46055.2.S1_x_at5/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010OsAffx.21182.2.S1_x_at3/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010OsAffx.21182.3.S1_x_at2/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010OsAffx.21182.1.S1_at2/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010OsAffx.21182.3.S1_at1/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25020OsAffx.25936.1.S1_s_at9/115+14405762..14408800transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25020OsAffx.25936.7.S1_s_at8/115+14405762..14408800transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25020OsAffx.25936.2.S1_x_at6/115+14405762..14408800transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25020OsAffx.25936.5.S1_x_at2/115+14405762..14408800transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25040Os.28539.1.S1_at11/115+14411311..14416247expressed protein
LOC_Os05g25040OsAffx.24095.1.A1_at11/115+14411311..14416247expressed protein
LOC_Os05g25040Os.10623.1.S1_x_at1/115+14411311..14416247expressed protein
LOC_Os05g25040OsAffx.3012.1.S1_at1/115+14411311..14416247expressed protein
LOC_Os05g25040Os.51711.1.S1_at1/115+14411311..14416247expressed protein
LOC_Os05g25030NANA5+14415880..14416254hypothetical protein
LOC_Os05g25050OsAffx.4421.1.S1_at11/115+14417561..14419035hypothetical protein
LOC_Os05g25050OsAffx.28941.1.S1_x_at1/115+14417561..14419035hypothetical protein
LOC_Os05g25060OsAffx.14819.1.S1_at11/115+14422340..14428742expressed protein
LOC_Os05g25070Os.8036.1.S1_at4/115+14432264..14436147expressed protein
LOC_Os05g25070OsAffx.15286.1.S1_at2/115+14432264..14436147expressed protein
LOC_Os05g25080Os.27034.1.A1_at8/115+14442907..14446172transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4421.1.S1_at--526--3051Chr05:14418861..14418885 (25 bp)
AATCGATTTCGCTTCAGCGCAAGGC
LOC_Os05g25050
OsAffx.4421.1.S1_at--1070--4891Chr05:14418851..14418875 (25 bp)
GCTTCAGCGCAAGGCCCGAGATTAA
LOC_Os05g25050
OsAffx.4421.1.S1_at--175--891Chr05:14418840..14418864 (25 bp)
AGGCCCGAGATTAAAGTCGCGGCAC
LOC_Os05g25050
OsAffx.4421.1.S1_at--825--4611Chr05:14418722..14418746 (25 bp)
GCGAGAAAATTGGTTCCGTCCGTCT
LOC_Os05g25050
OsAffx.4421.1.S1_at--1109--3794Chr12:21852998..21853022 (25 bp)
CTCCCATCTATTGCACGCGAAGTTA
NONE
OsAffx.4421.1.S1_at--792--5314Chr12:21853016..21853035 (20 bp)
GAAGTTACATTTTTGCCCTTCCACG
NONE
OsAffx.4421.1.S1_at--312--3351Chr05:14418175..14418678 (25 bp)
CACGTCTCTGCTATGCGAGTTTTTA
LOC_Os05g25050
OsAffx.4421.1.S1_at--713--3692Chr05:14417987..14418011 (25 bp)
CTATAATTGCGCATGGATTCCAGAT
LOC_Os05g25050
OsAffx.4421.1.S1_at--412--91Chr05:14417971..14417995 (25 bp)
ATTCCAGATAGGGTTGGCCCATCTA
LOC_Os05g25050
OsAffx.4421.1.S1_at--545--8411Chr05:14417956..14417980 (25 bp)
GGCCCATCTAATTGTACGTCCACAG
LOC_Os05g25050
OsAffx.4421.1.S1_at--201--4991Chr05:14417804..14417828 (25 bp)
GCATCCGCGCCGCTGAAGTTGCCAA
LOC_Os05g25050
Target Sequence 
AATCGATTTCGCTTCAGCGCAAGGCCCGAGATTAAAGTCGCGGCACTGGAGGAGGAACACGGCAGCGGGGAGGAGGAGGA
ACACGGCGGCGGGAGGGGAGGAGAGAAACACGGTGGCAGCACAGAAGAGGATGTAAAATGCGAGAAAATTGGTTCCGTCC
GTCTATTCCTCCCATCTATTGCACGCGAAGTTACATTTTTGCCCTTCCACGTCTCTGCTATGCGAGTTTTTAGGGGGGTG
TATTCTATAATTGCGCATGGATTCCAGATAGGGTTGGCCCATCTAATTGTACGTCCACAGCGCCGCGCCGCCGCACGCCT
CCTTCTTCTTCCTCTCGTCGCCGCTCGCCAGTGCCGCTCGCCCCCGCCTTCTTCTTCCTCTCGTCGCCACTCCCGGCGCC
TCCTGCCCATTCCTACCTACCGCTCCCGCATCCGCGCCGCTGAAGTTGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4421.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis