Browse Element(s) Details


Os.28539.1.S1_at

Description gb:AK111406.1
DB_XREF= gi:32996615
TID=Os.28539.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28539 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-E08, full insert sequence.
FL= gb:AK111406.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2504011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25000NANA5+14389780..14391056hypothetical protein
LOC_Os05g25010Os.10827.1.S1_x_at10/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010Os.46055.2.S1_x_at5/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010OsAffx.21182.2.S1_x_at3/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010OsAffx.21182.3.S1_x_at2/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010OsAffx.21182.1.S1_at2/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010OsAffx.21182.3.S1_at1/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25020OsAffx.25936.1.S1_s_at9/115+14405762..14408800transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25020OsAffx.25936.7.S1_s_at8/115+14405762..14408800transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25020OsAffx.25936.2.S1_x_at6/115+14405762..14408800transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25020OsAffx.25936.5.S1_x_at2/115+14405762..14408800transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25040Os.28539.1.S1_at11/115+14411311..14416247expressed protein
LOC_Os05g25040OsAffx.24095.1.A1_at11/115+14411311..14416247expressed protein
LOC_Os05g25040Os.10623.1.S1_x_at1/115+14411311..14416247expressed protein
LOC_Os05g25040OsAffx.3012.1.S1_at1/115+14411311..14416247expressed protein
LOC_Os05g25040Os.51711.1.S1_at1/115+14411311..14416247expressed protein
LOC_Os05g25030NANA5+14415880..14416254hypothetical protein
LOC_Os05g25050OsAffx.4421.1.S1_at11/115+14417561..14419035hypothetical protein
LOC_Os05g25050OsAffx.28941.1.S1_x_at1/115+14417561..14419035hypothetical protein
LOC_Os05g25060OsAffx.14819.1.S1_at11/115+14422340..14428742expressed protein
LOC_Os05g25070Os.8036.1.S1_at4/115+14432264..14436147expressed protein
LOC_Os05g25070OsAffx.15286.1.S1_at2/115+14432264..14436147expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28539.1.S1_at--1160--5591Chr05:14411658..14411682 (25 bp)
GACAAGCAGGAACACGCGCTGGCAA
LOC_Os05g25040
Os.28539.1.S1_at--231--10051Chr05:14411587..14411611 (25 bp)
TAGATTCGCGGTGGTTGTTCTACTG
LOC_Os05g25040
Os.28539.1.S1_at--926--6631Chr05:14411574..14411598 (25 bp)
GTTGTTCTACTGTCTGTGGAGGTTT
LOC_Os05g25040
Os.28539.1.S1_at--839--7871Chr05:14411554..14411578 (25 bp)
GGTTTAATGACGACGCCGTGGGCAT
LOC_Os05g25040
Os.28539.1.S1_at--457--3771Chr05:14411528..14411552 (25 bp)
CTCTGGGACGCTGTTTATTTTCTGT
LOC_Os05g25040
Os.28539.1.S1_at--69--8051Chr05:14411500..14411524 (25 bp)
GGAGATCAGTACCTTTTCAGTCTTC
LOC_Os05g25040
Os.28539.1.S1_at--1081--1731Chr05:14411490..14411514 (25 bp)
ACCTTTTCAGTCTTCAGGGTGTGAA
LOC_Os05g25040
Os.28539.1.S1_at--266--6091Chr05:14411418..14411442 (25 bp)
GAGTACTCCAGTAGCTATCACTCCT
LOC_Os05g25040
Os.28539.1.S1_at--781--10171Chr05:14411403..14411427 (25 bp)
TATCACTCCTCGCTAGGTCATATAT
LOC_Os05g25040
Os.28539.1.S1_at--679--2991Chr05:14411343..14411367 (25 bp)
AATGATCTGTGACTGTTGCATGTAT
LOC_Os05g25040
Os.28539.1.S1_at--1146--6871Chr05:14411322..14411346 (25 bp)
GTATAGTTTGTAAGCTGCAACCAGT
LOC_Os05g25040
Target Sequence 
GACAAGCAGGAACACGCGCTGGCAAGGGAGGTTGTGGTCGCCATCAAGGCTGACGCGGGTGGGACGTTCCGTAGATTCGC
GGTGGTTGTTCTACTGTCTGTGGAGGTTTAATGACGACGCCGTGGGCATGCTCTGGGACGCTGTTTATTTTCTGTTAAGG
AGATCAGTACCTTTTCAGTCTTCAGGGTGTGAATATATACAAGATATGTTGATATAACCTGTAGAAGACTCATTTATTTT
GAGTACTCCAGTAGCTATCACTCCTCGCTAGGTCATATATATAGTATGTTTCTGGTAATTTTGATTGAACTAATTAATGA
TCTGTGACTGTTGCATGTATAGTTTGTAAGCTGCAACCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28539.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis