Browse Element(s) Details


Os.6042.1.S1_at

Description gb:AU166923
DB_XREF= gi:12405322
DB_XREF=AU166923
CLONE=C53156
TID=Os.6042.1
CNT=9
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.6042 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2581011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25760Os.27034.1.A1_at5/117+14798099..14803594transposon protein, putative, Mutator sub-class
LOC_Os07g25760OsAffx.5441.1.S1_at4/117+14798099..14803594transposon protein, putative, Mutator sub-class
LOC_Os07g25770OsAffx.5440.1.S1_at11/117+14807179..14807499hypothetical protein
LOC_Os07g25780OsAffx.5441.1.S1_at11/117+14808994..14809500hypothetical protein
LOC_Os07g25790NANA7+14816298..14816803hypothetical protein
LOC_Os07g25800OsAffx.28587.1.S1_at11/117+14819084..14820554F-box domain containing protein, expressed
LOC_Os07g25810Os.6042.1.S1_at11/117+14822373..14823930transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g25820OsAffx.28588.1.S1_at11/117+14825961..14826463hypothetical protein
LOC_Os07g25830OsAffx.5443.1.S1_at11/117+14828639..14829619hypothetical protein
LOC_Os07g25840NANA7+14835046..14838771retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g25850Os.24831.1.S1_x_at8/117+14843400..14845300retrotransposon protein, putative, unclassified
LOC_Os07g25850Os.24831.3.S1_s_at6/117+14843400..14845300retrotransposon protein, putative, unclassified
LOC_Os07g25850Os.24831.3.S1_x_at5/117+14843400..14845300retrotransposon protein, putative, unclassified
LOC_Os07g25850Os.24831.4.S1_x_at2/117+14843400..14845300retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6042.1.S1_at--164--6391Chr07:14822656..14822680 (25 bp)
GATCGGTGGCAAGCACTAATACACT
LOC_Os07g25810
Os.6042.1.S1_at--845--331Chr07:14822638..14822662 (25 bp)
ATACACTGGTACCTACTTCGTTTCA
LOC_Os07g25810
Os.6042.1.S1_at--455--9891Chr07:14822625..14822649 (25 bp)
TACTTCGTTTCAGTTCTCTTGCACT
LOC_Os07g25810
Os.6042.1.S1_at--736--7531Chr07:14822596..14822620 (25 bp)
GGGCCATCATGGTATTTAGCTTGAG
LOC_Os07g25810
Os.6042.1.S1_at--1135--4911Chr07:14822578..14822602 (25 bp)
GCTTGAGCGAGTAGCTGCAATATTA
LOC_Os07g25810
Os.6042.1.S1_at--890--6911Chr07:14822552..14822576 (25 bp)
GTAGGCTTTTGTTGTGGAGCTTATA
LOC_Os07g25810
Os.6042.1.S1_at--1003--8071Chr07:14822537..14822561 (25 bp)
GGAGCTTATAGCAGTACTGTTGCGT
LOC_Os07g25810
Os.6042.1.S1_at--583--1951Chr07:14822522..14822546 (25 bp)
ACTGTTGCGTTTGATGGTTTCTCCC
LOC_Os07g25810
Os.6042.1.S1_at--1150--9451Chr07:14822503..14822527 (25 bp)
TCTCCCCTTCGGACGTTTGGATAAG
LOC_Os07g25810
Os.6042.1.S1_at--846--7951Chr07:14822485..14822509 (25 bp)
GGATAAGTCTGTTGGTACCCTATAT
LOC_Os07g25810
Os.6042.1.S1_at--190--6631Chr07:14822475..14822499 (25 bp)
GTTGGTACCCTATATGTTGTTATTA
LOC_Os07g25810
Target Sequence 
GATCGGTGGCAAGCACTAATACACTGGTACCTACTTCGTTTCAGTTCTCTTGCACTCCATGGGCCATCATGGTATTTAGC
TTGAGCGAGTAGCTGCAATATTATGTAGGCTTTTGTTGTGGAGCTTATAGCAGTACTGTTGCGTTTGATGGTTTCTCCCC
TTCGGACGTTTGGATAAGTCTGTTGGTACCCTATATGTTGTTATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6042.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis