Browse Element(s) Details


OsAffx.28586.1.S1_at

Description tigr:9635.m02462
TID=OsAffx.28586.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=PB1 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2568011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25630OsAffx.16451.1.A1_x_at3/117+14689776..14696696retrotransposon protein, putative, unclassified
LOC_Os07g25630Os.45161.1.A1_x_at2/117+14689776..14696696retrotransposon protein, putative, unclassified
LOC_Os07g25630OsAffx.22699.1.S1_x_at2/117+14689776..14696696retrotransposon protein, putative, unclassified
LOC_Os07g25630OsAffx.16451.1.A1_at1/117+14689776..14696696retrotransposon protein, putative, unclassified
LOC_Os07g25640NANA7+14697164..14700360hypothetical protein
LOC_Os07g25650Os.46303.1.S1_x_at1/117+14700817..14707194hypothetical protein
LOC_Os07g25660NANA7+14710606..14712683hypothetical protein
LOC_Os07g25670NANA7+14717663..14718388hypothetical protein
LOC_Os07g25680Os.53343.1.S1_x_at11/117+14721415..14729559Protein kinase domain containing protein, expressed
LOC_Os07g25680OsAffx.28586.1.S1_at11/117+14721415..14729559Protein kinase domain containing protein, expressed
LOC_Os07g25690Os.16456.1.S1_at11/117+14731541..14733207Al-induced protein, putative, expressed
LOC_Os07g25690OsAffx.5438.1.S1_at8/117+14731541..14733207Al-induced protein, putative, expressed
LOC_Os07g25700OsAffx.16409.1.S1_s_at11/117+14739676..14744172TLD family protein, expressed
LOC_Os07g25700OsAffx.16409.1.S1_at8/117+14739676..14744172TLD family protein, expressed
LOC_Os07g25710Os.28062.1.S1_a_at11/117+14752059..14757679myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os07g25710Os.28062.2.S2_at11/117+14752059..14757679myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28586.1.S1_at--451--9631Chr07:14727913..14727937 (25 bp)
TCATGGTTAATGGTTCTCTTCGGCA
LOC_Os07g25680
OsAffx.28586.1.S1_at--709--9571Chr07:14727929..14727953 (25 bp)
TCTTCGGCATGTCTTGCAGCGCAAG
LOC_Os07g25680
OsAffx.28586.1.S1_at--1090--6971Chr07:14728047..14728071 (25 bp)
GTACCTTGATCGTCGTAAGCGGCTT
LOC_Os07g25680
OsAffx.28586.1.S1_at--951--4691Chr07:14728065..14728089 (25 bp)
GCGGCTTATCATAGCAATGGATGCA
LOC_Os07g25680
OsAffx.28586.1.S1_at--663--10251Chr07:14728093..14728117 (25 bp)
TTTGGGCTGGAGTATTTGCACTCGA
LOC_Os07g25680
OsAffx.28586.1.S1_at--959--2251Chr07:14728119..14728143 (25 bp)
AAATATCGTGCACTTTGATCTGAAG
LOC_Os07g25680
OsAffx.28586.1.S1_at--791--1271Chr07:14728170..14728194 (25 bp)
AGATCAATCTCGTCCTATATGTAAA
LOC_Os07g25680
OsAffx.28586.1.S1_at--162--1431Chr07:14728341..14728365 (25 bp)
AGAAACACCCTGGTTTCAGGTGGTG
LOC_Os07g25680
OsAffx.28586.1.S1_at--582--8551Chr07:14728383..14728407 (25 bp)
TGGATGGCACCCGAATTACTCAATG
LOC_Os07g25680
OsAffx.28586.1.S1_at--338--6271Chr07:14728642..14728666 (25 bp)
GATGTATTTTCCTTTGGCATTGTTA
LOC_Os07g25680
OsAffx.28586.1.S1_at--624--9831Chr07:14729387..14729411 (25 bp)
TAAACAACACATTGAGGCCACCTGT
LOC_Os07g25680
Target Sequence 
TCATGGTTAATGGTTCTCTTCGGCATGTCTTGCAGCGCAAGGACAAGTACCTTGATCGTCGTAAGCGGCTTATCATAGCA
ATGGATGCAGCATTTGGGCTGGAGTATTTGCACTCGAAAAATATCGTGCACTTTGATCTGAAGTGTGATAACTTGCTGGT
GAATCTTAAAGATCAATCTCGTCCTATATGTAAAGTTGGTGATTTTGGCCTATCCAAAATAAAAAGAAACACCCTGGTTT
CAGGTGGTGTGAGGGGGACTCTCCCATGGATGGCACCCGAATTACTCAATGGTAGCAGCAATAAGGTGTCTGAAAAGGTT
GATGTATTTTCCTTTGGCATTGTTATGTGGGAAATACTTACTGGAGAAGAACCCTATGCCAATATGCATTATGGCGCAAT
TATTGGGGGAATTGTAAACAACACATTGAGGCCACCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28586.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis