Browse Element(s) Details


Os.17522.1.S1_s_at

Description gb:AK107070.1
DB_XREF= gi:32992279
TID=Os.17522.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17522 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0076F20.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-E10, full insert sequence.
FL= gb:AK107070.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3729011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37260Os.46642.1.S1_at11/1110+19625204..19627699fringe protein, putative, expressed
LOC_Os10g37270OsAffx.18553.1.S1_at8/1110+19632000..19632413hypothetical protein
LOC_Os10g37280Os.9843.1.S1_at11/1110+19633110..19641747sphingosine kinase, putative, expressed
LOC_Os10g37290Os.17522.1.S1_s_at11/1110+19642147..19642977expressed protein
LOC_Os10g37320OsAffx.7967.1.S1_at6/1110+19664699..19665102NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17522.1.S1_s_at--1008--8832Chr10:19642426..19642450 (25 bp)
TGATCTCTGATCTGAACTGAACTGA
LOC_Os10g37290
Os.17522.1.S1_s_at--146--3011Chr10:19642346..19642370 (25 bp)
AATGAGCGCTAAGCTGCTGTTTGTA
LOC_Os10g37290
Os.17522.1.S1_s_at--769--4771Chr10:19642334..19642358 (25 bp)
GCTGCTGTTTGTAGATGCTCGCTTA
LOC_Os10g37290
Os.17522.1.S1_s_at--453--6951Chr10:19642324..19642348 (25 bp)
GTAGATGCTCGCTTAGCTACTGTCC
LOC_Os10g37290
Os.17522.1.S1_s_at--1041--3651Chr10:19642313..19642337 (25 bp)
CTTAGCTACTGTCCCGTTGCTGGCT
LOC_Os10g37290
Os.17522.1.S1_s_at--448--10711Chr10:19642297..19642321 (25 bp)
TTGCTGGCTGCCTTGCTAGTTTTCC
LOC_Os10g37290
Os.17522.1.S1_s_at--963--10791Chr10:19642263..19642287 (25 bp)
TTGTTCCTCTGTTTTTTCCTGATCT
LOC_Os10g37290
Os.17522.1.S1_s_at--909--3871Chr10:19642255..19642279 (25 bp)
CTGTTTTTTCCTGATCTTCGTGTTT
LOC_Os10g37290
Os.17522.1.S1_s_at--853--4991Chr10:19642229..19642253 (25 bp)
GCATGAGTTGGTAGCACATTAGGTT
LOC_Os10g37290
Os.17522.1.S1_s_at--959--10011Chr10:19642218..19642242 (25 bp)
TAGCACATTAGGTTTGCTTTTGTCC
LOC_Os10g37290
Os.17522.1.S1_s_at--564--1671Chr10:19642173..19642197 (25 bp)
AGCCTAAGGCGTGAGCTTTGAAAAA
LOC_Os10g37290
Target Sequence 
TGATCTCTGATCTGAACTGAACTGATATGCTAATCAGGTTGAGCNAAGTAGTAGAAGCNGTAATTAGGAGAGAATAAATT
AATGAGCGCTAAGCTGCTGTTTGTAGATGCTCGCTTAGCTACTGTCCCGTTGCTGGCTGCCTTGCTAGTTTTCCCGCCCT
NTNTTTTGTTCCTCTGTTTTTTCCTGATCTTCGTGTTTTGCATGAGTTGGTAGCACATTAGGTTTGCTTTTGTCCGCGCT
GCCTCTCTGTACNAAAGCCTAAGGCGTGAGCTTTGAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17522.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis