Browse Element(s) Details


Os.17546.2.S1_x_at

Description gb:AK099411.1
DB_XREF= gi:32984620
TID=Os.17546.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17546 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013066C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013004F22, full insert sequence.
FL= gb:AK099411.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1911411/11expressed protein
LOC_Os11g176702/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g316291/11expressed protein
LOC_Os11g250701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g291301/11hypothetical protein
LOC_Os01g274401/11retrotransposon protein, putative, unclassified
LOC_Os04g116001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g220101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g257901/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g473801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g131701/11transposon protein, putative, unclassified
LOC_Os04g146401/11hypothetical protein
LOC_Os05g208301/11hypothetical protein
LOC_Os04g116201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g497101/11retrotransposon protein, putative, unclassified
LOC_Os08g283501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g253601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g145801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g113401/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g211241/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19070OsAffx.22908.1.S1_at1/118+11377703..11377975hypothetical protein
LOC_Os08g19080NANA8+11381049..11383349Transposable element protein, putative, Retrotrans_gag
LOC_Os08g19089NANA8+11385089..11385390NA
LOC_Os08g19100OsAffx.5872.1.S1_at11/118+11388992..11390465hypothetical protein
LOC_Os08g19110NANA8+11397296..11398623hypothetical protein
LOC_Os08g19114Os.17546.2.S1_x_at11/118+11401363..11403462expressed protein
LOC_Os08g19114Os.17546.5.A1_x_at6/118+11401363..11403462expressed protein
LOC_Os08g19120NANA8+11423984..11426286retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17546.2.S1_x_at--107--8311Chr08:11402864..11402888 (25 bp)
GGCTACCTTGATGATGTCCATCTGA
LOC_Os08g19114
Os.17546.2.S1_x_at--197--7271Chr08:11402879..11402903 (25 bp)
GTCCATCTGAGAGCATCTGAACATA
LOC_Os08g19114
Os.17546.2.S1_x_at--478--3712Chr08:11402920..11402944 (25 bp)
CTAGTTTCACGTCCTTAGAATGCAT
LOC_Os08g19114
Os.17546.2.S1_x_at--623--291Chr08:11402945..11402969 (25 bp)
ATAGACTTTGTTGGCGGTATGGCAT
LOC_Os08g19114
Os.17546.2.S1_x_at--580--891Chr08:11402971..11402995 (25 bp)
AGGCCCTTCAACCAGAATCTACCGA
LOC_Os08g19114
Os.17546.2.S1_x_at--565--79320Chr12:11121996..11122016 (21 bp)
GGATTCAAGCCCGAGACGTCAAAGT
NONE
Os.17546.2.S1_x_at--51--7972Chr08:11403097..11403121 (25 bp)
GGATCGCGCGGGTACTCTGCCAAGC
LOC_Os08g19114
Os.17546.2.S1_x_at--573--1873Chr08:11403174..11403198 (25 bp)
ACGATTTCGCCAAAGCAAGCTTGCC
LOC_Os08g19114
Os.17546.2.S1_x_at--21--7595Chr11:13791579..13791598 (20 bp)
GGGCTCATAAACCTCTATTACACTA
LOC_Os11g25070
Os.17546.2.S1_x_at--558--104998Chr12:9995968..9995991 (24 bp)
TTAACCATGTAAATTCCCCTGTATA
NONE
Os.17546.2.S1_x_at--756--2253Chr08:11403388..11403412 (25 bp)
AAATAGTCTCATAGGGCCATGTGAT
LOC_Os08g19114
Target Sequence 
GGCTACCTTGATGATGTCCATCTGAGAGCATCTGAACATATATCCATTGAAATAATCTAGTTTCACGTCCTTAGAATGCA
TATAGACTTTGTTGGCGGTATGGCATGAGGCCCTTCAACCAGAATCTACCGAAAGCTATGCGAAGAGTGGGGATTCAAGC
CCGAGACGTCAAAGTTAGTCGGGGCGAAGCCCCCTATGGCGAAGACTATGGAACAAGGACGGCGAGAGGCGAGGGATCGC
GCGGGTACTCTGCCAAGCCAGTGGCCTCTTGGGCGAAGGATGTAGGGCGAAGAGTATATGCCGAAGGGAGACGATTTCGC
CAAAGCAAGCTTGCCCCCGCGAGGGCCGAAGAAGCCTTTTCCGGCCCATCAAGCCTAGGGGCTATTGGGCCGACGATCGC
CCGACGGCCCATCAGGGGCTCATAAACCTCTATTACACTATATACCCATGTAAATGTCCCTTAACCATGTAAATTCCCCT
GTATAACCAAAACCCTAGTAGTAAGAACCTGTAATAGGGGCTATAAATAGTCTCATAGGGCCATGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17546.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis