Browse Element(s) Details


OsAffx.5872.1.S1_at

Description tigr:9636.m01874
TID=OsAffx.5872.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1910011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19050NANA8+11362595..11364229hypothetical protein
LOC_Os08g19060OsAffx.5871.1.S1_at11/118+11372447..11375356retrotransposon, putative, centromere-specific
LOC_Os08g19070OsAffx.22908.1.S1_at1/118+11377703..11377975hypothetical protein
LOC_Os08g19080NANA8+11381049..11383349Transposable element protein, putative, Retrotrans_gag
LOC_Os08g19089NANA8+11385089..11385390NA
LOC_Os08g19100OsAffx.5872.1.S1_at11/118+11388992..11390465hypothetical protein
LOC_Os08g19110NANA8+11397296..11398623hypothetical protein
LOC_Os08g19114Os.17546.2.S1_x_at11/118+11401363..11403462expressed protein
LOC_Os08g19114Os.17546.5.A1_x_at6/118+11401363..11403462expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5872.1.S1_at--517--1791Chr08:11390060..11390084 (25 bp)
ACCGACCTCCATGTCTGATGATGGG
LOC_Os08g19100
OsAffx.5872.1.S1_at--650--9211Chr08:11390106..11390130 (25 bp)
TCCACCACCAAAGTTGAGGCCGATG
LOC_Os08g19100
OsAffx.5872.1.S1_at--219--2391Chr08:11390132..11390156 (25 bp)
AAACGTGCTTCGATATTATTGCTGC
LOC_Os08g19100
OsAffx.5872.1.S1_at--302--171Chr08:11390146..11390170 (25 bp)
ATTATTGCTGCATTAAGGCTCTCCC
LOC_Os08g19100
OsAffx.5872.1.S1_at--413--6671Chr08:11390186..11390210 (25 bp)
GTTGCCGAATCCAAGGCCGTGGACA
LOC_Os08g19100
OsAffx.5872.1.S1_at--854--2951Chr08:11390198..11390222 (25 bp)
AAGGCCGTGGACATCCTTGGCTTGC
LOC_Os08g19100
OsAffx.5872.1.S1_at--726--10871Chr08:11390214..11390238 (25 bp)
TTGGCTTGCCTAGATCCACATGTCG
LOC_Os08g19100
OsAffx.5872.1.S1_at--94--6731Chr08:11390256..11390280 (25 bp)
GTTCTGCACATCAGTGCCGCGGATG
LOC_Os08g19100
OsAffx.5872.1.S1_at--1155--10031Chr08:11390299..11390323 (25 bp)
TAGATCTGCCCGTTGCCGTTGTGGT
LOC_Os08g19100
OsAffx.5872.1.S1_at--669--6611Chr08:11390316..11390340 (25 bp)
GTTGTGGTCGTTGAGCGCCTTGTCA
LOC_Os08g19100
OsAffx.5872.1.S1_at--390--5251Chr08:11390391..11390415 (25 bp)
GAATCTTCCAGATTTGGTGCTCCCG
LOC_Os08g19100
Target Sequence 
ACCGACCTCCATGTCTGATGATGGGGACTGGTCCGGCCTCCCTAGCTCCACCACCAAAGTTGAGGCCGATGAAAACGTGC
TTCGATATTATTGCTGCATTAAGGCTCTCCCTGCTGCACCATTGCCGTTGCCGAATCCAAGGCCGTGGACATCCTTGGCT
TGCCTAGATCCACATGTCGGCACGTGGACGACCTCCGTTCTGCACATCAGTGCCGCGGATGACCTTGCCTCACTTCGCCT
AGATCTGCCCGTTGCCGTTGTGGTCGTTGAGCGCCTTGTCACCAACCTTGTACACAACCTACAACAGCCAGATCCGGTGC
TCCCGAGCCGTGAATCTTCCAGATTTGGTGCTCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5872.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis