Browse Element(s) Details


Os.17546.5.A1_x_at

Description gb:AK072255.1
DB_XREF= gi:32982278
TID=Os.17546.5
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17546 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013066C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023008J03, full insert sequence.
FL= gb:AK072255.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g191146/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19070OsAffx.22908.1.S1_at1/118+11377703..11377975hypothetical protein
LOC_Os08g19080NANA8+11381049..11383349Transposable element protein, putative, Retrotrans_gag
LOC_Os08g19089NANA8+11385089..11385390NA
LOC_Os08g19100OsAffx.5872.1.S1_at11/118+11388992..11390465hypothetical protein
LOC_Os08g19110NANA8+11397296..11398623hypothetical protein
LOC_Os08g19114Os.17546.2.S1_x_at11/118+11401363..11403462expressed protein
LOC_Os08g19114Os.17546.5.A1_x_at6/118+11401363..11403462expressed protein
LOC_Os08g19120NANA8+11423984..11426286retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17546.5.A1_x_at--376--232Chr08:11402491..11402515 (25 bp)
ATATTGCTTATATCATTGTGTTTGC
LOC_Os08g19114
Os.17546.5.A1_x_at--929--6151Chr03:30581513..30581537 (25 bp)
GAGGTTACTATGCTCACAGTGGTTA
NONE
Os.17546.5.A1_x_at--662--5212Chr08:11402571..11402595 (25 bp)
GAATTCATTTTGTTATTGGTCTGTA
LOC_Os08g19114
Os.17546.5.A1_x_at--627--7171Chr03:30581562..30581586 (25 bp)
GTCTGTAGTTTGGTTTTGGCTCTTG
NONE
Os.17546.5.A1_x_at--462--10772Chr08:11402616..11402640 (25 bp)
TTGTTTTTCCACAGGCCCAGCAAAT
LOC_Os08g19114
Os.17546.5.A1_x_at--52--6472Chr08:11402650..11402674 (25 bp)
GATAATGTTAGTCATGGTCCCTCAT
LOC_Os08g19114
Os.17546.5.A1_x_at--976--7792Chr08:11402665..11402689 (25 bp)
GGTCCCTCATCTTGAAAAGGTCGCT
LOC_Os08g19114
Os.17546.5.A1_x_at--958--2891Chr03:30581654..30581678 (25 bp)
AAGGTCGCTGCGGACATTCCTCAAA
NONE
Os.17546.5.A1_x_at--1044--5852Chr08:11402715..11402783 (25 bp)
GAGCCTGTATATACCGTACTGTTTA
LOC_Os08g19114
Os.17546.5.A1_x_at--742--731Chr03:30581750..30581774 (25 bp)
ATGTTTACCGTGTTTTATCTAAGAG
NONE
Os.17546.5.A1_x_at--154--1551Chr03:30581781..30581805 (25 bp)
AGCTTGTCAAGTTGTGTGGCGAGAT
NONE
Target Sequence 
ATATTGCTTATATCATTGTGTTTGCATAATAAGGTTTTGGTACTAATATGAGGTTACTATGCTCACAGTGGTTAGATATA
GAATTCATTTTGTTATTGGTCTGTAGTTTGGTTTTGGCTCTTGTTTTGTTTTTCCACAGGCCCAGCAAATATGATATAAG
ATAATGTTAGTCATGGTCCCTCATCTTGAAAAGGTCGCTGCGGACATTCCTCAAACAAATATATGAGCCTGTATATACCG
TACTGTTTAATGGTCATCTCAAATGATAAATATANGAAAGTATTATATGTTTACCGTGTTTTATCTAAGAGTACATGAGC
TTGTCAAGTTGTGTGGCGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17546.5.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis