Browse Element(s) Details


Os.17736.1.S1_at

Description gb:AK061501.1
DB_XREF= gi:32971519
TID=Os.17736.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17736 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033108P10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-309-E03, full insert sequence.
FL= gb:AK061501.1 gb:AK102823.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0513011/11scarecrow-like transcription factor 11, putative, expressed
LOC_Os07g045501/11pleckstrin homology domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05070Os.17266.1.S1_at11/111+2375613..2379386expressed protein
LOC_Os01g05080Os.1798.1.S1_at11/111+2380332..2382440Thylakoid lumenal 15 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g05090Os.1799.1.S1_a_at11/111+2383175..2385399expressed protein
LOC_Os01g05100OsAffx.25610.1.S1_s_at11/111+2385407..2387285expressed protein
LOC_Os01g05100Os.53463.1.S1_at9/111+2385407..2387285expressed protein
LOC_Os01g05120OsAffx.23118.1.S1_at10/111+2397747..2399686Ubiquitin fusion degradation protein UFD1 containing protein
LOC_Os01g05130Os.17736.1.S1_at11/111+2400072..2402749scarecrow-like transcription factor 11, putative, expressed
LOC_Os01g05140Os.36597.1.S1_at10/111+2403277..2404853expressed protein
LOC_Os01g05140Os.36597.1.S1_x_at10/111+2403277..2404853expressed protein
LOC_Os01g05140OsAffx.10913.1.S1_at10/111+2403277..2404853expressed protein
LOC_Os01g05150Os.29062.1.S1_at11/111+2411073..2411874expressed protein
LOC_Os01g05160OsAffx.23120.1.S1_at10/111+2416461..2416964hypothetical protein
LOC_Os01g05170OsAffx.22785.1.S1_at11/111+2419044..2419704expressed protein
LOC_Os01g05170OsAffx.22785.1.S1_s_at11/111+2419044..2419704expressed protein
LOC_Os01g05170OsAffx.22785.1.S1_x_at11/111+2419044..2419704expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17736.1.S1_at--315--8471Chr01:2401242..2401266 (25 bp)
TGGCCGCCAATCACAGTTAGCATCA
LOC_Os01g05130
Os.17736.1.S1_at--771--271Chr01:2402356..2402380 (25 bp)
ATAGGCAGCCCAAGACCACAGGTAA
LOC_Os01g05130
Os.17736.1.S1_at--899--8611Chr01:2402390..2402414 (25 bp)
TGGTGATTCATCTTCCCAAAGCAAT
LOC_Os01g05130
Os.17736.1.S1_at--406--2351Chr01:2402407..2402431 (25 bp)
AAAGCAATGGCCGTGGGTCTCACAA
LOC_Os01g05130
Os.17736.1.S1_at--414--5731Chr01:2402454..2402478 (25 bp)
GACTGGAATCTTCTTAGACCACGGA
LOC_Os01g05130
Os.17736.1.S1_at--177--5311Chr01:2402488..2402512 (25 bp)
GAAGTCCGGAGTTAGCGTAGCCAAA
LOC_Os01g05130
Os.17736.1.S1_at--79--2391Chr01:2402511..2402535 (25 bp)
AAACTTTGCTCTTGTACCCCATTTG
LOC_Os01g05130
Os.17736.1.S1_at--32--9971Chr01:2402525..2402549 (25 bp)
TACCCCATTTGTACTCTGTATCTGA
LOC_Os01g05130
Os.17736.1.S1_at--567--8832Chr07:2006353..2006372 (20 bp)
TGATTAGCATTTTCTCCTGTTTCGC
LOC_Os07g04550
Os.17736.1.S1_at--706--1091Chr01:2402612..2402636 (25 bp)
AGTAAAATGTTTGTCCTTGCCTAAT
LOC_Os01g05130
Os.17736.1.S1_at--68--2571Chr01:2402646..2402670 (25 bp)
AACTGTTCCCCTGTTCTTGATATGT
LOC_Os01g05130
Target Sequence 
TGGCCGCCAATCACAGTTAGCATCACCTAGTAATAATCATCAGGATGGTTCGAATTCCAGCAGAACGGATGAAGTATCAA
GAACAAGATTTAGTGACTTCAACATTGATAGTTCAGAAAGCATATCTCTGAATGAACTAAAGAGGAAACAGCCTGAGCTT
GAAATGGAAACACCACCATCACATAGGCAGCCCAAGACCACAGGTAAGAGTATCGATGGTGATTCATCTTCCCAAAGCAA
TGGCCGTGGGTCTCACAAGTCAAACAAGCGTGAAAAGCTTGACTGGAATCTTCTTAGACCACGGAAATCAAAATGAAGTC
CGGAGTTAGCGTAGCCAAAACTTTGCTCTTGTACCCCATTTGTACTCTGTATCTGATTAGCATTTTCTCCTGTTTCGCGA
GTTATATCTAGAAAGCTGGTAACCAGTAGTTTATTTACAGTAAAATGTTTGTCCTTGCCTAATNTTGGTTTCAACTGTTC
CCCTGTTCTTGATATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17736.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis