Browse Element(s) Details


Os.36597.1.S1_at

Description gb:AK063058.1
DB_XREF= gi:32973076
TID=Os.36597.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36597 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0024G09.23 (P0024G09.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-F06, full insert sequence.
FL= gb:AK063058.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0514010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05070Os.17266.1.S1_at11/111+2375613..2379386expressed protein
LOC_Os01g05080Os.1798.1.S1_at11/111+2380332..2382440Thylakoid lumenal 15 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g05090Os.1799.1.S1_a_at11/111+2383175..2385399expressed protein
LOC_Os01g05100OsAffx.25610.1.S1_s_at11/111+2385407..2387285expressed protein
LOC_Os01g05100Os.53463.1.S1_at9/111+2385407..2387285expressed protein
LOC_Os01g05120OsAffx.23118.1.S1_at10/111+2397747..2399686Ubiquitin fusion degradation protein UFD1 containing protein
LOC_Os01g05130Os.17736.1.S1_at11/111+2400072..2402749scarecrow-like transcription factor 11, putative, expressed
LOC_Os01g05140Os.36597.1.S1_at10/111+2403277..2404853expressed protein
LOC_Os01g05140Os.36597.1.S1_x_at10/111+2403277..2404853expressed protein
LOC_Os01g05140OsAffx.10913.1.S1_at10/111+2403277..2404853expressed protein
LOC_Os01g05150Os.29062.1.S1_at11/111+2411073..2411874expressed protein
LOC_Os01g05160OsAffx.23120.1.S1_at10/111+2416461..2416964hypothetical protein
LOC_Os01g05170OsAffx.22785.1.S1_at11/111+2419044..2419704expressed protein
LOC_Os01g05170OsAffx.22785.1.S1_s_at11/111+2419044..2419704expressed protein
LOC_Os01g05170OsAffx.22785.1.S1_x_at11/111+2419044..2419704expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36597.1.S1_at--750--5411Chr01:2403349..2403373 (25 bp)
GAAGCCCGGAGATGCCACCGGCGTC
LOC_Os01g05140
Os.36597.1.S1_at--431--3471NONE
CAGGGCCGCAGGTCGTGTTGTCTCT
NONE
Os.36597.1.S1_at--1093--5691Chr01:2404603..2404627 (25 bp)
GACTAGTGAAATCTTTTCATGCCAT
LOC_Os01g05140
Os.36597.1.S1_at--967--7351Chr01:2404608..2404632 (25 bp)
GTGAAATCTTTTCATGCCATGTTGT
LOC_Os01g05140
Os.36597.1.S1_at--122--2191Chr01:2404753..2404777 (25 bp)
ACACATATTTTGTAGGTCCGTAAGC
LOC_Os01g05140
Os.36597.1.S1_at--483--6932Chr01:2404764..2404788 (25 bp)
GTAGGTCCGTAAGCCTTAGAATTGC
LOC_Os01g05140
Os.36597.1.S1_at--874--2651Chr01:2404774..2404798 (25 bp)
AAGCCTTAGAATTGCTACTCAGAAT
LOC_Os01g05140
Os.36597.1.S1_at--242--71Chr01:2404784..2404808 (25 bp)
ATTGCTACTCAGAATGTTTGTTTTC
LOC_Os01g05140
Os.36597.1.S1_at--487--6851Chr01:2404799..2404823 (25 bp)
GTTTGTTTTCTGATGGGTGATTTAC
LOC_Os01g05140
Os.36597.1.S1_at--928--6251Chr01:2404810..2404834 (25 bp)
GATGGGTGATTTACAAATTCTATTT
LOC_Os01g05140
Os.36597.1.S1_at--478--3691Chr01:2404829..2404853 (25 bp)
CTATTTATCCCCCTTTTGATAGAGT
LOC_Os01g05140
Target Sequence 
GAAGCCCGGAGATGCCACCGGCGTCGTCGGTTGCGTCGGCGGTGGAGAAGCTGCAGGCGGCGGCGCAGGACGCGGCGAAC
TCCTCGTCGCGCTCGGCGGCCGCCTTCTCCGAGCAGGCGCACCAGGTCCTCGTGCCCAGGGCCGCAGGTCGTGTTGTCTC
TCTATCAACTTGTACGAAGATCAGCGCCGTCAGCTTTGCAGTCGGTGTTGTGGTGGGCTTCACATTGAAGAGAAGACTAC
GCCGNNGGGCTGCTNGGCTGCTGAAAAGAATTAAGGNCNATGACTAGTGAAATCTTTTCATGCCATGTTGTTNTCAAGTT
CTNGTTGAGTGNTTGAGAACTATGNTTGGNTTGTGCNTNGCCCGCAAANTNTGGANANCCTTTTTACNANTTAGNATAAA
ANNNCNNNNNNNANAANCNNANNNTNTNNNAGCTGTATTACACATATTTTGTAGGTCCGTAAGCCTTAGAATTGCTACTC
AGAATGTTTGTTTTCTGATGGGTGATTTACAAATTCTATTTATCCCCCTTTTGATAGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36597.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis