Browse Element(s) Details


Os.17812.1.S1_at

Description gb:BI813653
DB_XREF= gi:16579558
DB_XREF=M001E12
CLONE=M001E12
TID=Os.17812.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.17812 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome P450 protein (OSJNBa0003P07.3), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g120803/11Cytochrome P450 98A1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g12050Os.49279.1.S1_at11/1110+6463890..6467534expressed protein
LOC_Os10g12050Os.17812.1.S1_x_at3/1110+6463890..6467534expressed protein
LOC_Os10g12080Os.17812.1.S1_at3/1110+6480765..6481487Cytochrome P450 98A1, putative
LOC_Os10g12080Os.17812.1.S1_x_at1/1110+6480765..6481487Cytochrome P450 98A1, putative
LOC_Os10g12090NANA10+6486179..6486427hypothetical protein
LOC_Os10g12110NANA10+6490392..6493312transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g12120OsAffx.18237.1.S1_at11/1110+6495066..6496856glucosyltransferase, putative
LOC_Os10g12130OsAffx.8801.1.S1_at3/1110+6497821..6505115expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0005792cellular_componentmicrosome
GO:0004497molecular_functionmonooxygenase activity
GO:0016711molecular_functionflavonoid 3'-monooxygenase activity
GO:0019825molecular_functionoxygen binding
GO:0046409molecular_functionp-coumarate 3-hydroxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17812.1.S1_at--362--4851Chr10:6481399..6481423 (25 bp)
GCTACGATGTCCCAAAGGACGCCAG
LOC_Os10g12080
Os.17812.1.S1_at--972--1871Chr10:6481402..6481426 (25 bp)
ACGATGTCCCAAAGGACGCCAGCGT
LOC_Os10g12080
Os.17812.1.S1_at--159--771Chr10:6481405..6481429 (25 bp)
ATGTCCCAAAGGACGCCAGCGTCGT
LOC_Os10g12080
Os.17812.1.S1_at--232--531Chr10:6481793..6481817 (25 bp)
ATCGACCTGCCGATCATTCCCAAAT
NONE
Os.17812.1.S1_at--308--3831Chr10:6481799..6481823 (25 bp)
CTGCCGATCATTCCCAAATACAAGG
NONE
Os.17812.1.S1_at--65--10191Chr10:6481966..6481990 (25 bp)
TATTGGCCACTATAGGAAATCAGGT
NONE
Os.17812.1.S1_at--510--5591Chr10:6481981..6482005 (25 bp)
GAAATCAGGTAGGTACTCACGCTCT
NONE
Os.17812.1.S1_at--471--411Chr10:6481984..6482008 (25 bp)
ATCAGGTAGGTACTCACGCTCTGTT
NONE
Os.17812.1.S1_at--864--1012Chr10:6481987..6482011 (25 bp)
AGGTAGGTACTCACGCTCTGTTTTA
NONE
Os.17812.1.S1_at--1027--10051Chr10:6481990..6482014 (25 bp)
TAGGTACTCACGCTCTGTTTTAAAG
NONE
Os.17812.1.S1_at--91--7832Chr10:6481992..6482016 (25 bp)
GGTACTCACGCTCTGTTTTAAAGGT
NONE
Target Sequence 
GCTACGATGTCCCAAAGGACGCCAGCGTCGTCGTCAACGTCGACTACCGCGTCCTCCCCTTCGGCGCTGGCCGTCGGGTG
TGCCCCGGCGCGCAGCTCGGGATCAGCCTCGTGGCATCCATGATCGGCCACCTGCTGCACCAGTTCACATGGGCGCTGCA
AGACGGCACACGGCCGGAGGACCTCGACATGATGGAGTCCCCAGGGCTCGTCACCTTCATGGCCACGCCGTTGCAGGTTG
TTGCCATGCCACGCCTCGACAAGGAGGAGCTGTTCAAGCGAGTGCCAGTCGACATGTCCTGATCGACCTGCCGATCATTC
CCAAATACAAGGGGCAGACCAAGGTCCTGGATAAACCTAGGTCCGNNNAGCATATGAATCGACATCCAAGGACANTTNTT
AATGTTTTGTTGGGCATGGTAGCACGCCAGCACTTACNTTATGCTCGCCAGACAANCCTTCANAGGGAAAAACTATATTG
GCCACTATAGGAAATCAGGTAGGTACTCACGCTCTGTTTTAAAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17812.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis