Browse Element(s) Details


Os.49279.1.S1_at

Description gb:AK068170.1
DB_XREF= gi:32978188
TID=Os.49279.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49279 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013132J20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013132J20, full insert sequence.
FL= gb:AK068170.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1205011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g12020NANA10+6441578..6444886retrotransposon protein, putative, unclassified
LOC_Os10g12030NANA10+6445503..6451652retrotransposon protein, putative, unclassified
LOC_Os10g12050Os.49279.1.S1_at11/1110+6463890..6467534expressed protein
LOC_Os10g12050Os.17812.1.S1_x_at3/1110+6463890..6467534expressed protein
LOC_Os10g12080Os.17812.1.S1_at3/1110+6480765..6481487Cytochrome P450 98A1, putative
LOC_Os10g12080Os.17812.1.S1_x_at1/1110+6480765..6481487Cytochrome P450 98A1, putative
LOC_Os10g12090NANA10+6486179..6486427hypothetical protein
LOC_Os10g12110NANA10+6490392..6493312transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49279.1.S1_at--326--8731Chr10:6466958..6466982 (25 bp)
TGTCATCGTCAATGTGTGGGCCGTA
LOC_Os10g12050
Os.49279.1.S1_at--545--10091Chr10:6466981..6467005 (25 bp)
TAGGACGCGACCTCAGTGTCTGGGA
LOC_Os10g12050
Os.49279.1.S1_at--354--5831Chr10:6466989..6467013 (25 bp)
GACCTCAGTGTCTGGGACAGCCCAC
LOC_Os10g12050
Os.49279.1.S1_at--605--6071Chr10:6467024..6467048 (25 bp)
GAGTACCGGCCGGAGCGTTTCCTCG
LOC_Os10g12050
Os.49279.1.S1_at--233--6851Chr10:6467040..6467064 (25 bp)
GTTTCCTCGAGGAGAGCATCGACAT
LOC_Os10g12050
Os.49279.1.S1_at--525--9732Chr10:6481522..6481546 (25 bp)
TCAAGGGCAGCGACTACCGCGTCCT
NONE
Os.49279.1.S1_at--311--5831Chr10:6467338..6467362 (25 bp)
GACCTGCCGTTCATTCCAAATACAA
LOC_Os10g12050
Os.49279.1.S1_at--931--332Chr10:6481842..6481866 (25 bp)
ATAAACCTAGGTCCGCCTAGCATAT
NONE
Os.49279.1.S1_at--1132--1012Chr10:6481850..6481874 (25 bp)
AGGTCCGCCTAGCATATGAATCGAC
NONE
Os.49279.1.S1_at--176--4092Chr10:6481871..6481895 (25 bp)
CGACATCCAAGGACATTTTTAATGT
NONE
Os.49279.1.S1_at--596--371Chr10:6467481..6467505 (25 bp)
AGCACTCACCCTCTGTTTTAAAGGT
LOC_Os10g12050
Target Sequence 
TGTCATCGTCAATGTGTGGGCCGTAGGACGCGACCTCAGTGTCTGGGACAGCCCACTGCCCCACTCGAGTACCGGCCGGA
GCGTTTCCTCGAGGAGAGCATCGACATCAAGGGCAGCGACTACCGCGTCCTCCCCTTCGGCGCTGGCCGTCGGGTTTGCC
CCGGCGCACAGCTCGGGATCAGCCTCGTGGCATCCATGATCGGCCACCTGCTGCACCAGTTCACATGGGCGCTGCCAGAC
GGCACATGGCCGGAGGACCTCGACATGATGGAGTCCTCAGGGCTCGTCACCTTCATGGCCACGCCGTTGCAGGTTGTTGC
CATGCCACGCCTCGACAAGGAGGAGCTGTTCAAGCGAGTGCCAGTCGACATGTCCTGATCGACCTGCCGTTCATTCCAAA
TACAAGGGGCAGACCAAGGTCCTGGATAAACCTAGGTCCGCCTAGCATATGAATCGACATCCAAGGACATTTTTAATGTT
TTGTTGGGCATGGTAGCACGCCAGCACTTACCTTATGCTCGCCAGCACTCACCCTCTGTTTTAAAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49279.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis