Browse Element(s) Details


Os.17812.1.S1_x_at

Description gb:BI813653
DB_XREF= gi:16579558
DB_XREF=M001E12
CLONE=M001E12
TID=Os.17812.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.17812 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome P450 protein (OSJNBa0003P07.3), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g120503/11expressed protein
LOC_Os10g120801/11Cytochrome P450 98A1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g12020NANA10+6441578..6444886retrotransposon protein, putative, unclassified
LOC_Os10g12030NANA10+6445503..6451652retrotransposon protein, putative, unclassified
LOC_Os10g12050Os.49279.1.S1_at11/1110+6463890..6467534expressed protein
LOC_Os10g12050Os.17812.1.S1_x_at3/1110+6463890..6467534expressed protein
LOC_Os10g12080Os.17812.1.S1_at3/1110+6480765..6481487Cytochrome P450 98A1, putative
LOC_Os10g12080Os.17812.1.S1_x_at1/1110+6480765..6481487Cytochrome P450 98A1, putative
LOC_Os10g12090NANA10+6486179..6486427hypothetical protein
LOC_Os10g12110NANA10+6490392..6493312transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0005792cellular_componentmicrosome
GO:0004497molecular_functionmonooxygenase activity
GO:0016711molecular_functionflavonoid 3'-monooxygenase activity
GO:0019825molecular_functionoxygen binding
GO:0046409molecular_functionp-coumarate 3-hydroxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17812.1.S1_x_at--973--1871Chr10:6481402..6481426 (25 bp)
ACGATGTCCCAAAGGACGCCAGCGT
LOC_Os10g12080
Os.17812.1.S1_x_at--1036--7952Chr10:6481591..6481615 (25 bp)
GGATCAGCCTCGTGGCATCCATGAT
NONE
Os.17812.1.S1_x_at--667--10511Chr10:6481635..6481659 (25 bp)
TTCACATGGGCGCTGCAAGACGGCA
NONE
Os.17812.1.S1_x_at--880--5831Chr10:6481671..6481695 (25 bp)
GACCTCGACATGATGGAGTCCCCAG
NONE
Os.17812.1.S1_x_at--320--4512Chr10:6481718..6481742 (25 bp)
GCCGTTGCAGGTTGTTGCCATGCCA
NONE
Os.17812.1.S1_x_at--252--6112Chr10:6481771..6481795 (25 bp)
GAGTGCCAGTCGACATGTCCTGATC
NONE
Os.17812.1.S1_x_at--307--3831Chr10:6481799..6481823 (25 bp)
CTGCCGATCATTCCCAAATACAAGG
NONE
Os.17812.1.S1_x_at--66--10191Chr10:6481966..6481990 (25 bp)
TATTGGCCACTATAGGAAATCAGGT
NONE
Os.17812.1.S1_x_at--511--5591Chr10:6481981..6482005 (25 bp)
GAAATCAGGTAGGTACTCACGCTCT
NONE
Os.17812.1.S1_x_at--92--7832Chr10:6481992..6482016 (25 bp)
GGTACTCACGCTCTGTTTTAAAGGT
NONE
Os.17812.1.S1_x_at--423--1051Chr10:6482013..6482037 (25 bp)
AGGTGTCACCTGTTAATCCATCTAC
NONE
Target Sequence 
ACGATGTCCCAAAGGACGCCAGCGTCGTCGTCAACGTCGACTACCGCGTCCTCCCCTTCGGCGCTGGCCGTCGGGTGTGC
CCCGGCGCGCAGCTCGGGATCAGCCTCGTGGCATCCATGATCGGCCACCTGCTGCACCAGTTCACATGGGCGCTGCAAGA
CGGCACACGGCCGGAGGACCTCGACATGATGGAGTCCCCAGGGCTCGTCACCTTCATGGCCACGCCGTTGCAGGTTGTTG
CCATGCCACGCCTCGACAAGGAGGAGCTGTTCAAGCGAGTGCCAGTCGACATGTCCTGATCGACCTGCCGATCATTCCCA
AATACAAGGGGCAGACCAAGGTCCTGGATAAACCTAGGTCCGNNNAGCATATGAATCGACATCCAAGGACANTTNTTAAT
GTTTTGTTGGGCATGGTAGCACGCCAGCACTTACNTTATGCTCGCCAGACAANCCTTCANAGGGAAAAACTATATTGGCC
ACTATAGGAAATCAGGTAGGTACTCACGCTCTGTTTTAAAGGTGTCACCTGTTAATCCATCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17812.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis