Browse Element(s) Details


Os.17946.1.A1_x_at

Description gb:D24250
DB_XREF= gi:428102
DB_XREF=RICR1581A
CLONE=R1581_1A
TID=Os.17946.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.17946 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5108011/11Glutamate decarboxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51030Os.272.1.S1_at11/113+29118715..29126579Phytochrome A, putative, expressed
LOC_Os03g51030Os.47842.1.A1_s_at11/113+29118715..29126579Phytochrome A, putative, expressed
LOC_Os03g51040OsAffx.13452.1.S1_at10/113+29131475..29133714Protein kinase domain containing protein
LOC_Os03g51050Os.38367.1.S1_s_at11/113+29135580..29140934Peptide transporter PTR2, putative, expressed
LOC_Os03g51060NANA3+29141702..29142233Leucine-rich repeat receptor protein kinase EXS precursor, putative
LOC_Os03g51080Os.9438.1.S1_at11/113+29150783..29159315Glutamate decarboxylase, putative, expressed
LOC_Os03g51080Os.17946.1.A1_x_at11/113+29150783..29159315Glutamate decarboxylase, putative, expressed
LOC_Os03g51090Os.20600.1.S1_x_at11/113+29160523..29162777F-box domain containing protein, expressed
LOC_Os03g51090Os.20600.1.S1_at11/113+29160523..29162777F-box domain containing protein, expressed
LOC_Os03g51100OsAffx.13453.1.S1_at10/113+29166962..29167964hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006536biological_processglutamate metabolism
GO:0006807biological_processnitrogen compound metabolism
GO:0004351molecular_functionglutamate decarboxylase activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17946.1.A1_x_at--96--3071Chr03:29153308..29153332 (25 bp)
AATCTAATACTCTTATACATGTGCA
LOC_Os03g51080
Os.17946.1.A1_x_at--569--9531Chr03:29153310..29153334 (25 bp)
TCTAATACTCTTATACATGTGCATA
LOC_Os03g51080
Os.17946.1.A1_x_at--434--3091Chr03:29153313..29153337 (25 bp)
AATACTCTTATACATGTGCATAAAC
LOC_Os03g51080
Os.17946.1.A1_x_at--405--2112Chr03:29153324..29153348 (25 bp)
ACATGTGCATAAACTTTATACCGTA
LOC_Os03g51080
Os.17946.1.A1_x_at--926--10357Chr06:22868239..22868259 (21 bp)
TTTATACCGTAAACTTTGCACACAT
NONE
Os.17946.1.A1_x_at--594--10174Chr07:21432356..21432558 (25 bp)
TATACCGTAAACTTTGCACACATAA
NONE
Os.17946.1.A1_x_at--419--9975Chr07:21432358..21432560 (25 bp)
TACCGTAAACTTTGCACACATAAAC
NONE
Os.17946.1.A1_x_at--122--2534Chr05:1334774..1334852 (25 bp)
AACTTTGCACACATAAACTTACTTT
NONE
Os.17946.1.A1_x_at--1147--3672Chr05:1334776..1334927 (25 bp)
CTTTGCACACATAAACTTACTTTAT
NONE
Os.17946.1.A1_x_at--1079--89111Chr06:21784987..21785012 (25 bp)
TGACTTATAAACATTCGCTTTACAA
NONE
Os.17946.1.A1_x_at--38--20110Chr07:18115363..18115387 (25 bp)
ACATTCGCTTTACAAACTTTAGGTG
NONE
Target Sequence 
AATCTAATACTCTTATACATGTGCATAAACTTTATACCGTAAACTTTGCACACATAAACTTACTTTATGTATAGAAATAT
TTTATATATACAAATATTTGAATCTGAATTTAAATTTAAATCGGGTATATAAACTTTTGACTTATAAACATTCGCTCTAC
AAACTTTAGGTGGATAAACTTTAGATGTGTAAACTTTAGGTGTATAAACTTTTGACTTATAAACATTCGCTTTACAAACT
TTAGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17946.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis