Browse Element(s) Details


OsAffx.13452.1.S1_at

Description tigr:9631.m04988
TID=OsAffx.13452.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=probable protein kinase (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5104010/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51020Os.17861.1.S2_at11/113+29108530..29115730protein kinase, putative, expressed
LOC_Os03g51020Os.17861.1.S1_at11/113+29108530..29115730protein kinase, putative, expressed
LOC_Os03g51030Os.272.1.S1_at11/113+29118715..29126579Phytochrome A, putative, expressed
LOC_Os03g51030Os.47842.1.A1_s_at11/113+29118715..29126579Phytochrome A, putative, expressed
LOC_Os03g51040OsAffx.13452.1.S1_at10/113+29131475..29133714Protein kinase domain containing protein
LOC_Os03g51050Os.38367.1.S1_s_at11/113+29135580..29140934Peptide transporter PTR2, putative, expressed
LOC_Os03g51060NANA3+29141702..29142233Leucine-rich repeat receptor protein kinase EXS precursor, putative
LOC_Os03g51080Os.9438.1.S1_at11/113+29150783..29159315Glutamate decarboxylase, putative, expressed
LOC_Os03g51080Os.17946.1.A1_x_at11/113+29150783..29159315Glutamate decarboxylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13452.1.S1_at--36--5871Chr03:29132574..29132598 (25 bp)
GAGCCAGCGAGCACGGATCGCGTAC
LOC_Os03g51040
OsAffx.13452.1.S1_at--281--4831Chr03:29132027..29132386 (25 bp)
GCTACCACGCGCCAGAGTATGCAAT
LOC_Os03g51040
OsAffx.13452.1.S1_at--1142--5131Chr03:29132007..29132031 (25 bp)
GCAATGACGGGACAATTGACCCAGA
LOC_Os03g51040
OsAffx.13452.1.S1_at--768--3891Chr03:29131925..29131949 (25 bp)
CTGTGGATCACACCATGCCCAAGGG
LOC_Os03g51040
OsAffx.13452.1.S1_at--172--5051Chr03:29131802..29131921 (25 bp)
GCAGAGCTTGGTTACCTGGGCCACT
LOC_Os03g51040
OsAffx.13452.1.S1_at--853--8651NONE
TGGGCCACTCCAAGGTTAAGCGAGG
NONE
OsAffx.13452.1.S1_at--352--2911Chr03:29131759..29131783 (25 bp)
AAGGTTAAGCAGTGCGTGGATCCCA
LOC_Os03g51040
OsAffx.13452.1.S1_at--1150--7291Chr03:29131748..29131772 (25 bp)
GTGCGTGGATCCCAAGCTGAACGAC
LOC_Os03g51040
OsAffx.13452.1.S1_at--355--2671Chr03:29131735..29131759 (25 bp)
AAGCTGAACGACGAGTACCCACCAA
LOC_Os03g51040
OsAffx.13452.1.S1_at--992--4071Chr03:29131727..29131751 (25 bp)
CGACGAGTACCCACCAAAGGCAGTG
LOC_Os03g51040
OsAffx.13452.1.S1_at--1049--8691Chr03:29131545..29131569 (25 bp)
TGTGCGTCCAGTACGAGGCTGATTT
LOC_Os03g51040
Target Sequence 
GAGCCAGCGAGCACGGATCGCGTACGGCGCGGCGAGGGGACTGGAGTACCTGCACGAGCGCGCGCAGCCACCGATCGTCC
ACCGCGACATCCGCTCCAGCAACGCGCTCGTCTTCGACGGCCACGACGCCAAGATCGGCGACTTCAACCTCACCAACCAG
TCGCCGGACTCCGCCGCCCGCCTCCACTCCACCAAGGTGCTCGGCACCTTCGGCTACCACGCGCCAGAGTATGCAATGAC
GGGACAATTGACCCAGAAGAGCGATGTTTACAGCTTCGGTGTTGTCCTTCTTGAGCTTTTGACTGGGAGGAAGCCTGTGG
ATCACACCATGCCCAAGGGGCAGCAGAGCTTGGTTACCTGGGCCACTCCAAGGTTAAGCGAGGACAAGGTTAAGCAGTGC
GTGGATCCCAAGCTGAACGACGAGTACCCACCAAAGGCAGTGGCCAAGCTCGCGGCGGTGGCGGCGCTGTGCGTCCAGTA
CGAGGCTGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13452.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis