Browse Element(s) Details


Os.17861.1.S1_at

Description gb:AK106321.1
DB_XREF= gi:32991530
TID=Os.17861.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17861 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-E08, full insert sequence.
FL= gb:AK120135.1 gb:AK106321.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5102011/11protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50980Os.19367.1.S1_at11/113+29077376..29085535Sumoylation ligase E3, putative, expressed
LOC_Os03g50990OsAffx.25674.1.S1_at11/113+29085918..29086310expressed protein
LOC_Os03g51000Os.46088.1.S1_s_at11/113+29088237..290961233,4-dihydroxy-2-butanone kinase, putative, expressed
LOC_Os03g51010Os.8043.1.S1_at11/113+29100698..29104260hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g51020Os.17861.1.S2_at11/113+29108530..29115730protein kinase, putative, expressed
LOC_Os03g51020Os.17861.1.S1_at11/113+29108530..29115730protein kinase, putative, expressed
LOC_Os03g51030Os.272.1.S1_at11/113+29118715..29126579Phytochrome A, putative, expressed
LOC_Os03g51030Os.47842.1.A1_s_at11/113+29118715..29126579Phytochrome A, putative, expressed
LOC_Os03g51040OsAffx.13452.1.S1_at10/113+29131475..29133714Protein kinase domain containing protein
LOC_Os03g51050Os.38367.1.S1_s_at11/113+29135580..29140934Peptide transporter PTR2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17861.1.S1_at--804--5551Chr03:29112596..29112620 (25 bp)
GAAACCTGGTTTTTAGCACATGAAA
LOC_Os03g51020
Os.17861.1.S1_at--1038--1951Chr03:29112542..29112566 (25 bp)
ACTGGTCACACAAGTGGGCCTGATC
LOC_Os03g51020
Os.17861.1.S1_at--272--6171Chr03:29112467..29112491 (25 bp)
GAGGATTCTTACATATCTGGCGAAC
LOC_Os03g51020
Os.17861.1.S1_at--398--9451Chr03:29112452..29112476 (25 bp)
TCTGGCGAACAATATTTTCACGGGA
LOC_Os03g51020
Os.17861.1.S1_at--351--6591Chr03:29112363..29112387 (25 bp)
GATTGCTCAGTATGATGGCCAGCTT
LOC_Os03g51020
Os.17861.1.S1_at--352--6231Chr03:29112350..29112374 (25 bp)
GATGGCCAGCTTTTGGACCCAGAAG
LOC_Os03g51020
Os.17861.1.S1_at--886--3451Chr03:29112301..29112325 (25 bp)
CAGTCTGGCAGGGTTTCGTTTCACA
LOC_Os03g51020
Os.17861.1.S1_at--869--2991Chr03:29112236..29112260 (25 bp)
AATGATTCTGAACGTCCTCATCCTG
LOC_Os03g51020
Os.17861.1.S1_at--717--3751Chr03:29112220..29112244 (25 bp)
CTCATCCTGATGACCCATTTGTGGA
LOC_Os03g51020
Os.17861.1.S1_at--1013--391Chr03:29112190..29112214 (25 bp)
ATCAGCATGGTTCAGTTAGGTCAAT
LOC_Os03g51020
Os.17861.1.S1_at--1029--7071Chr03:29112171..29112195 (25 bp)
GTCAATTGGTGTTGGCATTAGCAGT
LOC_Os03g51020
Target Sequence 
GAAACCTGGTTTTTAGCACATGAAATTGACTATCCTAGTGACAATGAGAAGGCAACTGGTCACACAAGTGGGCCTGATCG
GCATGATCGTCCCACANANGATGATGATGATGACCAATCATTTGTTGAGGAGGATTCTTACATATCTGGCGAACAATATT
TTCACGGGAAGAACATTGCACAAATAGGTACTTCGGAGGGGCCAATGGGGCATGGAATTCCTGATAATGATTTGATTGCT
CAGTATGATGGCCAGCTTTTGGACCCAGAAGAACTAAATTTGATGCATTCAGAACCAGTCTGGCAGGGTTTCGTTTCACA
GAATAGTGAATTAGGCATGTTAGGAAATGGAAAATTCCTTAATGATTCTGAACGTCCTCATCCTGATGACCCATTTGTGG
AGGATGATCAGCATGGTTCAGTTAGGTCAATTGGTGTTGGCATTAGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17861.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis