Browse Element(s) Details


Os.46088.1.S1_s_at

Description gb:AK119254.1
DB_XREF= gi:37988877
TID=Os.46088.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46088 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-123-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-G11, full insert sequence.
FL= gb:AK119254.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5100011/113,4-dihydroxy-2-butanone kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50970Os.12990.1.S1_x_at11/113+29065222..29070465retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g50980Os.19367.1.S1_at11/113+29077376..29085535Sumoylation ligase E3, putative, expressed
LOC_Os03g50990OsAffx.25674.1.S1_at11/113+29085918..29086310expressed protein
LOC_Os03g51000Os.46088.1.S1_s_at11/113+29088237..290961233,4-dihydroxy-2-butanone kinase, putative, expressed
LOC_Os03g51010Os.8043.1.S1_at11/113+29100698..29104260hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g51020Os.17861.1.S2_at11/113+29108530..29115730protein kinase, putative, expressed
LOC_Os03g51020Os.17861.1.S1_at11/113+29108530..29115730protein kinase, putative, expressed
LOC_Os03g51030Os.272.1.S1_at11/113+29118715..29126579Phytochrome A, putative, expressed
LOC_Os03g51030Os.47842.1.A1_s_at11/113+29118715..29126579Phytochrome A, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0004371molecular_functionglycerone kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46088.1.S1_s_at--366--7851Chr03:29088979..29089003 (25 bp)
GGTACCGCACAATGTTGGATGCTCT
LOC_Os03g51000
Os.46088.1.S1_s_at--1086--7971Chr03:29088963..29088987 (25 bp)
GGATGCTCTAATTCCTGCATGTACA
LOC_Os03g51000
Os.46088.1.S1_s_at--732--9471Chr03:29088860..29088880 (21 bp)
TCTGAAACAGTCTCTCAAAGCCGGG
LOC_Os03g51000
Os.46088.1.S1_s_at--639--4451Chr03:29088820..29088844 (25 bp)
GCCTTTATCGCGTCTTCTGAAGCAG
LOC_Os03g51000
Os.46088.1.S1_s_at--426--3391Chr03:29088792..29088816 (25 bp)
CAGCTGGTGCTGAATCCACTAAACA
LOC_Os03g51000
Os.46088.1.S1_s_at--63--5831Chr03:29088587..29088611 (25 bp)
GACCTGGTGGCATCAGTTCCTGATC
LOC_Os03g51000
Os.46088.1.S1_s_at--711--5351Chr03:29088513..29088537 (25 bp)
GAAGAGTAAGCTGCACGCCTCGGAT
LOC_Os03g51000
Os.46088.1.S1_s_at--904--1991Chr03:29088419..29088443 (25 bp)
ACTATACTGACTGACGGCGAAATTC
LOC_Os03g51000
Os.46088.1.S1_s_at--916--10511Chr03:29088370..29088394 (25 bp)
TTCAGATTTGGTTTCCGCTTGTGCC
LOC_Os03g51000
Os.46088.1.S1_s_at--1113--7271Chr03:29088350..29088374 (25 bp)
GTGCCTTTCTGCATGGGCCGAGAAA
LOC_Os03g51000
Os.46088.1.S1_s_at--1117--471Chr03:29088326..29088350 (25 bp)
ATCGAGTTCCGTATTCTTTTGCCCT
LOC_Os03g51000
Target Sequence 
GGTACCGCACAATGTTGGATGCTCTAATTCCTGCATGTACAGTTCTGAAACAGTCTCTCAAAGCCGGGGACGATCCTGTG
ACTGCCTTTATCGCGTCTTCTGAAGCAGCATCAGCTGGTGCTGAATCCACTAAACAGATGCAAGCGAAGGCAGGACGGTC
GTCATACATTGCACCCGACCTGGTGGCATCAGTTCCTGATCCAGGAGCAGTTGCTGCAGCAGCATGGTACCGTGCGGCGG
CTCATGCAGTGAAGAGTAAGCTGCACGCCTCGGATAGCTAGGGTAGCGCATGGCATGCTATTATATATGTGCACGCTATG
CCTCATTCATAGATCAAAAGTACGACTATACTGACTGACGGCGAAATTCTGGGGGCGTTTTCTCACCCACCCCTTCAGAT
TTGGTTTCCGCTTGTGCCTTTCTGCATGGGCCGAGAAATCGAGTTCCGTATTCTTTTGCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46088.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis