Browse Element(s) Details


Os.12990.1.S1_x_at

Description gb:AK108923.1
DB_XREF= gi:32994132
TID=Os.12990.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12990 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-152-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-H10, full insert sequence.
FL= gb:AK108923.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5097011/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50920OsAffx.13451.1.S1_at11/113+29041184..29041900ZF-HD protein dimerisation region containing protein, expressed
LOC_Os03g50920OsAffx.13451.1.S1_x_at11/113+29041184..29041900ZF-HD protein dimerisation region containing protein, expressed
LOC_Os03g50940Os.24044.1.S1_at9/113+29051234..29054086Cytochrome c oxidase assembly protein ctaG, putative, expressed
LOC_Os03g50960OsAffx.3569.1.S1_at11/113+29060906..29061504Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g50960OsAffx.3569.1.S1_x_at11/113+29060906..29061504Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g50970Os.12990.1.S1_x_at11/113+29065222..29070465retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g50980Os.19367.1.S1_at11/113+29077376..29085535Sumoylation ligase E3, putative, expressed
LOC_Os03g50990OsAffx.25674.1.S1_at11/113+29085918..29086310expressed protein
LOC_Os03g51000Os.46088.1.S1_s_at11/113+29088237..290961233,4-dihydroxy-2-butanone kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12990.1.S1_x_at--687--6291Chr03:29065467..29065491 (25 bp)
GATGATGTCATGAAGCGCGTAGCTA
LOC_Os03g50970
Os.12990.1.S1_x_at--169--3711Chr03:29065445..29065469 (25 bp)
CTAGGTGGGCCCGTGTAGATAACAC
LOC_Os03g50970
Os.12990.1.S1_x_at--453--1271Chr03:29065429..29065453 (25 bp)
AGATAACACGACACTAGCTAGCTGT
LOC_Os03g50970
Os.12990.1.S1_x_at--968--4851Chr03:29065413..29065437 (25 bp)
GCTAGCTGTCCTGAAACACATGCAC
LOC_Os03g50970
Os.12990.1.S1_x_at--180--2471Chr03:29065399..29065423 (25 bp)
AACACATGCACTTTTATTCCCTTTT
LOC_Os03g50970
Os.12990.1.S1_x_at--12--10211Chr03:29065385..29065409 (25 bp)
TATTCCCTTTTGTACCGCTCGGAAG
LOC_Os03g50970
Os.12990.1.S1_x_at--987--8751Chr03:29065375..29065399 (25 bp)
TGTACCGCTCGGAAGCTTCTAGAAG
LOC_Os03g50970
Os.12990.1.S1_x_at--554--1931Chr03:29065339..29065363 (25 bp)
ACGGCGGATTTGATTATTGGTTTAT
LOC_Os03g50970
Os.12990.1.S1_x_at--1052--10511Chr03:29065314..29065338 (25 bp)
TTCAGAATGCTGTACCGGATACGGT
LOC_Os03g50970
Os.12990.1.S1_x_at--73--6471Chr03:29065297..29065321 (25 bp)
GATACGGTTAGTACAACGTACGGTG
LOC_Os03g50970
Os.12990.1.S1_x_at--770--1891Chr03:29065282..29065306 (25 bp)
ACGTACGGTGTATATATATGCGCTA
LOC_Os03g50970
Target Sequence 
GATGATGTCATGAAGCGCGTAGCTAGGTGGGCCCGTGTAGATAACACGACACTAGCTAGCTGTCCTGAAACACATGCACT
TTTATTCCCTTTTGTACCGCTCGGAAGCTTCTAGAAGNNTCGTTTGTGACGGCGGATTTGATTATTGGTTTATTTCAGAA
TGCTGTACCGGATACGGTTAGTACAACGTACGGTGTATATATATGCGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12990.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis