Browse Element(s) Details


OsAffx.3569.1.S1_x_at

Description tigr:9631.m04980
TID=OsAffx.3569.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative root-specific protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5096011/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50920OsAffx.13451.1.S1_at11/113+29041184..29041900ZF-HD protein dimerisation region containing protein, expressed
LOC_Os03g50920OsAffx.13451.1.S1_x_at11/113+29041184..29041900ZF-HD protein dimerisation region containing protein, expressed
LOC_Os03g50940Os.24044.1.S1_at9/113+29051234..29054086Cytochrome c oxidase assembly protein ctaG, putative, expressed
LOC_Os03g50960OsAffx.3569.1.S1_at11/113+29060906..29061504Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g50960OsAffx.3569.1.S1_x_at11/113+29060906..29061504Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g50970Os.12990.1.S1_x_at11/113+29065222..29070465retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g50980Os.19367.1.S1_at11/113+29077376..29085535Sumoylation ligase E3, putative, expressed
LOC_Os03g50990OsAffx.25674.1.S1_at11/113+29085918..29086310expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3569.1.S1_x_at--361--2171Chr03:29060966..29060990 (25 bp)
ACACTAGCTATCCAATCCGACACAT
LOC_Os03g50960
OsAffx.3569.1.S1_x_at--532--3711Chr03:29060969..29060993 (25 bp)
CTAGCTATCCAATCCGACACATTAA
LOC_Os03g50960
OsAffx.3569.1.S1_x_at--462--551Chr03:29060980..29061004 (25 bp)
ATCCGACACATTAAGATGGCGTCCA
LOC_Os03g50960
OsAffx.3569.1.S1_x_at--1034--1311Chr03:29060993..29061017 (25 bp)
AGATGGCGTCCAAGAGTCGTTTGCT
LOC_Os03g50960
OsAffx.3569.1.S1_x_at--127--4651Chr03:29060998..29061022 (25 bp)
GCGTCCAAGAGTCGTTTGCTCGCGA
LOC_Os03g50960
OsAffx.3569.1.S1_x_at--389--3231Chr03:29061003..29061027 (25 bp)
CAAGAGTCGTTTGCTCGCGATCTTC
LOC_Os03g50960
OsAffx.3569.1.S1_x_at--1058--4611Chr03:29061019..29061043 (25 bp)
GCGATCTTCCTTGCCGTGAACCTGG
LOC_Os03g50960
OsAffx.3569.1.S1_x_at--436--4151Chr03:29061120..29061144 (25 bp)
CGCGCTGGCCGACCTGAAGGTGTGC
LOC_Os03g50960
OsAffx.3569.1.S1_x_at--259--8991Chr03:29061170..29061194 (25 bp)
TGAAGATCAACGTGCCGGCGAGCCA
LOC_Os03g50960
OsAffx.3569.1.S1_x_at--800--7631Chr03:29061214..29061238 (25 bp)
GGGAGCCTCGTGAACCTCGACGCCG
LOC_Os03g50960
OsAffx.3569.1.S1_x_at--688--4211Chr03:29061254..29061278 (25 bp)
CCGCCATCAGGCTCAGCGTGCTGGG
LOC_Os03g50960
Target Sequence 
ACACTAGCTATCCAATCCGACACATTAAGATGGCGTCCAAGAGTCGTTTGCTCGCGATCTTCCTTGCCGTGAACCTGGTG
GCGCTGCACGCCGGCGTGGCGCGCGGGCAGCAGAGCCCGCCGTCGTCGACGCGCGGGAACCCGTGCCCGACGAGCGCGCT
GGCCGACCTGAAGGTGTGCGCCGACGTGCTGGTGCTGCTGAAGCTGAAGATCAACGTGCCGGCGAGCCAGCAGTGCTGCC
CGCTGCTGGGGAGCCTCGTGAACCTCGACGCCGCGGCGTGCCTCTGCGCCGCCATCAGGCTCAGCGTGCTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3569.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis