Browse Element(s) Details


Os.18094.2.S1_a_at

Description gb:CF304349
DB_XREF= gi:33676110
DB_XREF=ABF1--04-L19.g1
CLONE=ABF1--04-L19
TID=Os.18094.2
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.18094 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_177421.1 (A.thaliana) protein phosphatase 2C
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4604011/11Protein phosphatase 2C ABI2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46020Os.8961.1.S1_s_at11/115+26599203..26600883WRKY DNA binding domain containing protein, expressed
LOC_Os05g46030Os.50543.1.S1_x_at11/115+26602710..26621489expressed protein
LOC_Os05g46030OsAffx.27335.1.S1_x_at11/115+26602710..26621489expressed protein
LOC_Os05g46040Os.18094.2.S1_a_at11/115+26621897..26624551Protein phosphatase 2C ABI2, putative, expressed
LOC_Os05g46050Os.54851.1.S1_at11/115+26631240..26632756F-box domain containing protein, expressed
LOC_Os05g46060OsAffx.4632.2.S1_at11/115+26633993..26635219F-box domain containing protein
LOC_Os05g46070OsAffx.1407.1.S1_at3/115+26637834..26638620hAT dimerisation domain-containing protein, putative
LOC_Os05g46070Os.55414.1.S1_at2/115+26637834..26638620hAT dimerisation domain-containing protein, putative
LOC_Os05g46079NANA5+26646611..26647236NA
LOC_Os05g46090OsAffx.15120.1.S1_at11/115+26649139..26652880Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0006970biological_processresponse to osmotic stress
GO:0009408biological_processresponse to heat
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0008287cellular_componentprotein serine/threonine phosphatase complex
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
GO:0005509molecular_functioncalcium ion binding
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18094.2.S1_a_at--104--7391Chr05:26622515..26622539 (25 bp)
GTGATCGCTATCTGAAACCATTTGT
LOC_Os05g46040
Os.18094.2.S1_a_at--543--5551Chr05:26622502..26622526 (25 bp)
GAAACCATTTGTCATTCCAAAACCG
LOC_Os05g46040
Os.18094.2.S1_a_at--487--5331Chr05:26622477..26622501 (25 bp)
GAAGTTATGGTCGTTCCACGGGCGA
LOC_Os05g46040
Os.18094.2.S1_a_at--227--4351Chr05:26622462..26622486 (25 bp)
CCACGGGCGAAGGATGATGACTGTC
LOC_Os05g46040
Os.18094.2.S1_a_at--104--6311Chr05:26622447..26622471 (25 bp)
GATGACTGTCTTATTCTAGCAAGCG
LOC_Os05g46040
Os.18094.2.S1_a_at--1148--6191Chr05:26622393..26622417 (25 bp)
GAGGCATGCAAAGTCGCACGCCGAC
LOC_Os05g46040
Os.18094.2.S1_a_at--919--3431Chr05:26622369..26622393 (25 bp)
CAGATCCTTCTGTGGCACAAGAACA
LOC_Os05g46040
Os.18094.2.S1_a_at--166--3311Chr05:26622354..26622378 (25 bp)
CACAAGAACAATGGCGCTGCATCAC
LOC_Os05g46040
Os.18094.2.S1_a_at--597--4571Chr05:26622341..26622365 (25 bp)
GCGCTGCATCACCATTGTCTGATGA
LOC_Os05g46040
Os.18094.2.S1_a_at--1024--2711Chr05:26622287..26622311 (25 bp)
AAGCAGCTGCCGATTATCTGATGAG
LOC_Os05g46040
Os.18094.2.S1_a_at--657--6551Chr05:26622276..26622300 (25 bp)
GATTATCTGATGAGACTCGCTCTGA
LOC_Os05g46040
Target Sequence 
GTGATCGCTATCTGAAACCATTTGTCATTCCAAAACCGGAAGTTATGGTCGTTCCACGGGCGAAGGATGATGACTGTCTT
ATTCTAGCAAGCGATGGGCTGTGGGATGTNGTGTCAAATGAAGAGGCATGCAAAGTCGCACGCCGACAGATCCTTCTGTG
GCACAAGAACAATGGCGCTGCATCACCATTGTCTGATGAGGGTGAAGGATCACCGACCCTGCTGCCAAAGCAGCTGCCGA
TTATCTGATGAGACTCGCTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18094.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis