Browse Element(s) Details


OsAffx.1407.1.S1_at

Description gb:NM_187174.1
DB_XREF= gi:34901433
GEN=OSJNBa0075N02.23
TID=OsAffx.1407.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0075N02.23 (OSJNBa0075N02.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g442503/11Synaptobrevin family protein, expressed
LOC_Os05g460703/11hAT dimerisation domain-containing protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g44190Os.50620.1.S1_at11/1112+27378707..27380715ATPase 3, putative, expressed
LOC_Os12g44190OsAffx.25760.1.S1_x_at1/1112+27378707..27380715ATPase 3, putative, expressed
LOC_Os12g44200NANA12+27384508..27388587retrotransposon protein, putative, unclassified
LOC_Os12g44210Os.56885.1.S1_at11/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44210OsAffx.32185.1.S1_s_at11/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44210OsAffx.32185.1.S1_x_at2/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44210OsAffx.25760.1.S1_x_at1/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44220OsAffx.32185.1.S1_x_at11/1112+27392907..27393875Cell Division Protein AAA ATPase family, putative
LOC_Os12g44220OsAffx.32185.1.S1_s_at11/1112+27392907..27393875Cell Division Protein AAA ATPase family, putative
LOC_Os12g44230Os.5853.2.S1_x_at11/1112+27396595..27401472HIPL1 protein precursor, putative, expressed
LOC_Os12g44230Os.5853.1.S1_at11/1112+27396595..27401472HIPL1 protein precursor, putative, expressed
LOC_Os12g44240Os.15359.1.S1_at11/1112+27402712..27404908BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os12g44250OsAffx.32186.1.S1_at11/1112+27405565..27407849Synaptobrevin family protein, expressed
LOC_Os12g44250OsAffx.1407.1.S1_at3/1112+27405565..27407849Synaptobrevin family protein, expressed
LOC_Os12g44250Os.55414.1.S1_at2/1112+27405565..27407849Synaptobrevin family protein, expressed
LOC_Os12g44260OsAffx.20114.1.S1_x_at11/1112+27408160..27408829DnaJ domain containing protein
LOC_Os12g44260OsAffx.20114.1.S1_at11/1112+27408160..27408829DnaJ domain containing protein
LOC_Os12g44270OsAffx.7886.1.S1_at11/1112+27410275..27410646hypothetical protein
LOC_Os12g44280NANA12+27413047..27413997hypothetical protein
LOC_Os12g44290OsAffx.20116.1.S1_at11/1112+27417687..27419435Cytochrome P450 family protein, expressed
LOC_Os12g44300OsAffx.32187.1.S1_s_at11/1112+27428036..27430667Sodium/hydrogen exchanger family protein, expressed
LOC_Os12g44300Os.10071.1.S1_at6/1112+27428036..27430667Sodium/hydrogen exchanger family protein, expressed
LOC_Os12g44310Os.10598.1.S1_at10/1112+27431232..274384309,10-9',10' carotenoid cleavage dioxygenase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1407.1.S1_at--336--6678Chr12:27406286..27406309 (24 bp)
GTTGCAAGTGAGTTTGCCAGATTCA
LOC_Os12g44250
OsAffx.1407.1.S1_at--379--2871Chr07:15786571..15786595 (25 bp)
AAGTGAGTTTGCCAGATTCATCGAT
NONE
OsAffx.1407.1.S1_at--940--6071Chr07:15786575..15786599 (25 bp)
GAGTTTGCCAGATTCATCGATGTCC
NONE
OsAffx.1407.1.S1_at--588--10291Chr07:15786578..15786602 (25 bp)
TTTGCCAGATTCATCGATGTCCGCG
NONE
OsAffx.1407.1.S1_at--1018--1251Chr07:15786584..15786608 (25 bp)
AGATTCATCGATGTCCGCGCCTGAG
NONE
OsAffx.1407.1.S1_at--997--116Chr07:15786586..15786610 (25 bp)
ATTCATCGATGTCCGCGCCTGAGAT
NONE
OsAffx.1407.1.S1_at--817--9295Chr12:27406322..27406341 (20 bp)
TCCGCGCCTGAGATTCTGAAGTTTG
LOC_Os12g44250
OsAffx.1407.1.S1_at--956--4559Chr07:15786600..15786624 (25 bp)
GCGCCTGAGATTCTGAAGTTTGTTA
NONE
OsAffx.1407.1.S1_at--751--53312Chr12:27406334..27406357 (24 bp)
GAAGTTTGTTATGGATGCAGATTTA
LOC_Os12g44250
OsAffx.1407.1.S1_at--12--6331Chr07:15786627..15786651 (25 bp)
GATGCAGATTTATATCCAAATGTTT
NONE
OsAffx.1407.1.S1_at--1120--177Chr07:15786634..15786658 (25 bp)
ATTTATATCCAAATGTTTCAGTTGC
NONE
Target Sequence 
GTTGCAAGTGAGTTTGCCAGATTCATCGATGTCCGCGCCTGAGATTCTGAAGTTTGTTATGGATGCAGATTTATATCCAA
ATGTTTCAGTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1407.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis