Browse Element(s) Details


Os.5853.2.S1_x_at

Description gb:AK065168.1
DB_XREF= gi:32975186
TID=Os.5853.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5853 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002C15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002C15, full insert sequence.
FL= gb:AK065168.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4423011/11HIPL1 protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g44180Os.14785.1.S1_at11/1112+27373774..27377633expressed protein
LOC_Os12g44190Os.50620.1.S1_at11/1112+27378707..27380715ATPase 3, putative, expressed
LOC_Os12g44190OsAffx.25760.1.S1_x_at1/1112+27378707..27380715ATPase 3, putative, expressed
LOC_Os12g44200NANA12+27384508..27388587retrotransposon protein, putative, unclassified
LOC_Os12g44210Os.56885.1.S1_at11/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44210OsAffx.32185.1.S1_s_at11/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44210OsAffx.32185.1.S1_x_at2/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44210OsAffx.25760.1.S1_x_at1/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44220OsAffx.32185.1.S1_x_at11/1112+27392907..27393875Cell Division Protein AAA ATPase family, putative
LOC_Os12g44220OsAffx.32185.1.S1_s_at11/1112+27392907..27393875Cell Division Protein AAA ATPase family, putative
LOC_Os12g44230Os.5853.2.S1_x_at11/1112+27396595..27401472HIPL1 protein precursor, putative, expressed
LOC_Os12g44230Os.5853.1.S1_at11/1112+27396595..27401472HIPL1 protein precursor, putative, expressed
LOC_Os12g44240Os.15359.1.S1_at11/1112+27402712..27404908BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os12g44250OsAffx.32186.1.S1_at11/1112+27405565..27407849Synaptobrevin family protein, expressed
LOC_Os12g44250OsAffx.1407.1.S1_at3/1112+27405565..27407849Synaptobrevin family protein, expressed
LOC_Os12g44250Os.55414.1.S1_at2/1112+27405565..27407849Synaptobrevin family protein, expressed
LOC_Os12g44260OsAffx.20114.1.S1_x_at11/1112+27408160..27408829DnaJ domain containing protein
LOC_Os12g44260OsAffx.20114.1.S1_at11/1112+27408160..27408829DnaJ domain containing protein
LOC_Os12g44270OsAffx.7886.1.S1_at11/1112+27410275..27410646hypothetical protein
LOC_Os12g44280NANA12+27413047..27413997hypothetical protein
LOC_Os12g44290OsAffx.20116.1.S1_at11/1112+27417687..27419435Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5853.2.S1_x_at--38--4511Chr12:27400880..27400904 (25 bp)
GCCGATCTGTATGCATCAGCGATGT
LOC_Os12g44230
Os.5853.2.S1_x_at--830--791Chr12:27400901..27400925 (25 bp)
ATGTGGACCGGCACAGAGGCTCCAG
LOC_Os12g44230
Os.5853.2.S1_x_at--631--1511Chr12:27400928..27400952 (25 bp)
AGCAGCGGGAACTACAGCTCGAGTC
LOC_Os12g44230
Os.5853.2.S1_x_at--269--9871Chr12:27400940..27400964 (25 bp)
TACAGCTCGAGTCTGATCTCCTTCA
LOC_Os12g44230
Os.5853.2.S1_x_at--54--1611Chr12:27400964..27400988 (25 bp)
AGCTGCTCCAAGAGTTCTCCTATAG
LOC_Os12g44230
Os.5853.2.S1_x_at--290--9151Chr12:27401146..27401170 (25 bp)
TGCGACGAACACTGGGACGACGACG
LOC_Os12g44230
Os.5853.2.S1_x_at--346--2451Chr12:27401266..27401290 (25 bp)
AAAATAAGCCTCTTGCACTGTTAGC
LOC_Os12g44230
Os.5853.2.S1_x_at--133--5111Chr12:27401280..27401304 (25 bp)
GCACTGTTAGCTAGTACTCCTATAT
LOC_Os12g44230
Os.5853.2.S1_x_at--684--10671Chr12:27401347..27401371 (25 bp)
TTCCTTTTTCCTTTGTCTGAACAAT
LOC_Os12g44230
Os.5853.2.S1_x_at--335--7171Chr12:27401361..27401385 (25 bp)
GTCTGAACAATCTCACTGTCTTGAT
LOC_Os12g44230
Os.5853.2.S1_x_at--215--5991Chr12:27401422..27401446 (25 bp)
GAGAGGGTTGCATCATTATCAAGGT
LOC_Os12g44230
Target Sequence 
GCCGATCTGTATGCATCAGCGATGTGGACCGGCACAGAGGCTCCAGAGAGCAGCGGGAACTACAGCTCGAGTCTGATCTC
CTTCAGCTGCTCCAAGAGTTCTCCTATAGNGTGTGACACTGCTGNTGGAAGCCCCCTCCCATCACTNGGGTACATATACT
CGTTTGGNCGAGGACAACNACAAGNACACNTACGTCCTGTCGANCAAGGGNGTCTACCGGNNTTGTGCGNNCCCAGCCTC
TGCGGNCTACACCTGTCCAACAGAGAAACNTGCGACGAACACTGGGACGACGACGCCTTNGNTCANCGGNCATCAGTGAC
AGGCAANCAGATGATGGGAGCGCTTCTNCTGTCGNTTCTTATNTTCTGGGTTTTGGTAAGATAGAAACTGCAAAAATAAG
CCTCTTGCACTGTTAGCTAGTACTCCTATATAAGTCATGATTTGAGNCCTGATGCACCCCTCCTCACTCTTTTTTCCTTT
TTCCTTTGTCTGAACAATCTCACTGTCTTGATAACCGTATGTAAATAATCAGTATTTCAGTTATGCAAGAGAGGGTTGCA
TCATTATCAAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5853.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis