Browse Element(s) Details


Os.15359.1.S1_at

Description gb:AK069880.1
DB_XREF= gi:32979904
TID=Os.15359.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.15359 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023036D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036D12, full insert sequence.
FL= gb:AK069880.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4424011/11BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g44190Os.50620.1.S1_at11/1112+27378707..27380715ATPase 3, putative, expressed
LOC_Os12g44190OsAffx.25760.1.S1_x_at1/1112+27378707..27380715ATPase 3, putative, expressed
LOC_Os12g44200NANA12+27384508..27388587retrotransposon protein, putative, unclassified
LOC_Os12g44210Os.56885.1.S1_at11/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44210OsAffx.32185.1.S1_s_at11/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44210OsAffx.32185.1.S1_x_at2/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44210OsAffx.25760.1.S1_x_at1/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44220OsAffx.32185.1.S1_x_at11/1112+27392907..27393875Cell Division Protein AAA ATPase family, putative
LOC_Os12g44220OsAffx.32185.1.S1_s_at11/1112+27392907..27393875Cell Division Protein AAA ATPase family, putative
LOC_Os12g44230Os.5853.2.S1_x_at11/1112+27396595..27401472HIPL1 protein precursor, putative, expressed
LOC_Os12g44230Os.5853.1.S1_at11/1112+27396595..27401472HIPL1 protein precursor, putative, expressed
LOC_Os12g44240Os.15359.1.S1_at11/1112+27402712..27404908BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os12g44250OsAffx.32186.1.S1_at11/1112+27405565..27407849Synaptobrevin family protein, expressed
LOC_Os12g44250OsAffx.1407.1.S1_at3/1112+27405565..27407849Synaptobrevin family protein, expressed
LOC_Os12g44250Os.55414.1.S1_at2/1112+27405565..27407849Synaptobrevin family protein, expressed
LOC_Os12g44260OsAffx.20114.1.S1_x_at11/1112+27408160..27408829DnaJ domain containing protein
LOC_Os12g44260OsAffx.20114.1.S1_at11/1112+27408160..27408829DnaJ domain containing protein
LOC_Os12g44270OsAffx.7886.1.S1_at11/1112+27410275..27410646hypothetical protein
LOC_Os12g44280NANA12+27413047..27413997hypothetical protein
LOC_Os12g44290OsAffx.20116.1.S1_at11/1112+27417687..27419435Cytochrome P450 family protein, expressed
LOC_Os12g44300OsAffx.32187.1.S1_s_at11/1112+27428036..27430667Sodium/hydrogen exchanger family protein, expressed
LOC_Os12g44300Os.10071.1.S1_at6/1112+27428036..27430667Sodium/hydrogen exchanger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0008375molecular_functionacetylglucosaminyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15359.1.S1_at--565--551Chr12:27404316..27404340 (25 bp)
ATCCGCACTACCTCACAATTGAAGA
LOC_Os12g44240
Os.15359.1.S1_at--1144--9011Chr12:27404365..27404389 (25 bp)
TGCACCATTTGCTCGGAAGTTTCAT
LOC_Os12g44240
Os.15359.1.S1_at--520--6831Chr12:27404383..27404407 (25 bp)
GTTTCATGCAGATGACCCGGTTCTA
LOC_Os12g44240
Os.15359.1.S1_at--473--1291Chr12:27404424..27404448 (25 bp)
AGATCCTGTTGCGTGGCCCAGACAT
LOC_Os12g44240
Os.15359.1.S1_at--609--831Chr12:27404487..27404511 (25 bp)
ATGGAAGTGACCCTTGCTCAGTCAT
LOC_Os12g44240
Os.15359.1.S1_at--187--5311Chr12:27404590..27404614 (25 bp)
GAAGTTTCACCCAAGGCAGTGCAAG
LOC_Os12g44240
Os.15359.1.S1_at--127--231Chr12:27404686..27404710 (25 bp)
ATATTTCACCGTTTTGTCGGGCAGC
LOC_Os12g44240
Os.15359.1.S1_at--883--6191Chr12:27404742..27404766 (25 bp)
GAGGCAGCTTCCATTTTAACCTGTG
LOC_Os12g44240
Os.15359.1.S1_at--615--2811Chr12:27404773..27404797 (25 bp)
AAGTTTTAGGAGCACGCCACTACAT
LOC_Os12g44240
Os.15359.1.S1_at--1149--4731Chr12:27404815..27404839 (25 bp)
GCTGATATTGTGTCATCCCTTAGTA
LOC_Os12g44240
Os.15359.1.S1_at--902--5271Chr12:27404852..27404876 (25 bp)
GAATGTATCATCCACGGTCTGAAGT
LOC_Os12g44240
Target Sequence 
ATCCGCACTACCTCACAATTGAAGACTTGGACAGGATGGTTGCTAGCGATGCACCATTTGCTCGGAAGTTTCATGCAGAT
GACCCGGTTCTAGACAAGATAGATGCGGAGATCCTGTTGCGTGGCCCAGACATGCTCACTCCTGGAGGATGGTGTGGAGG
GACACGAGAAAATGGAAGTGACCCTTGCTCAGTCATCGGCAATACCACTCACCTTCAGCCTGGTCGAGGAGCTGTACGGC
TGCAGCGGCTCATGACGTCGCTCCTGTCAGAGGAGAAGTTTCACCCAAGGCAGTGCAAGTGATGTGTTTCTGACTGAAGA
AGGCTCTGTGGATGGAGAGTGCTCCTGGTGATATATGGNTGTTCTGACCCATATTTCACCGTTTTGTCGGGCAGCTTCCT
TTTTTTTTGAGGTTTTTTTTTNNNGAGGGAGGCAGCTTCCATTTTAACCTGTGCAATATAAGTTTTAGGAGCACGCCACT
ACATCGATCAGTTTGTTGTATGCTGATATTGTGTCATCCCTTAGTACAAACACGAGATGAATGTATCATCCACGGTCTGA
AGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15359.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis