Browse Element(s) Details


Os.10071.1.S1_at

Description gb:AK070701.1
DB_XREF= gi:32980725
TID=Os.10071.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10071 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023058I16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023058I16, full insert sequence.
FL= gb:AK070701.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g443006/11Sodium/hydrogen exchanger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g44240Os.15359.1.S1_at11/1112+27402712..27404908BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os12g44250OsAffx.32186.1.S1_at11/1112+27405565..27407849Synaptobrevin family protein, expressed
LOC_Os12g44250OsAffx.1407.1.S1_at3/1112+27405565..27407849Synaptobrevin family protein, expressed
LOC_Os12g44250Os.55414.1.S1_at2/1112+27405565..27407849Synaptobrevin family protein, expressed
LOC_Os12g44260OsAffx.20114.1.S1_x_at11/1112+27408160..27408829DnaJ domain containing protein
LOC_Os12g44260OsAffx.20114.1.S1_at11/1112+27408160..27408829DnaJ domain containing protein
LOC_Os12g44270OsAffx.7886.1.S1_at11/1112+27410275..27410646hypothetical protein
LOC_Os12g44280NANA12+27413047..27413997hypothetical protein
LOC_Os12g44290OsAffx.20116.1.S1_at11/1112+27417687..27419435Cytochrome P450 family protein, expressed
LOC_Os12g44300OsAffx.32187.1.S1_s_at11/1112+27428036..27430667Sodium/hydrogen exchanger family protein, expressed
LOC_Os12g44300Os.10071.1.S1_at6/1112+27428036..27430667Sodium/hydrogen exchanger family protein, expressed
LOC_Os12g44310Os.10598.1.S1_at10/1112+27431232..274384309,10-9',10' carotenoid cleavage dioxygenase 1, putative, expressed
LOC_Os12g44320OsAffx.20117.1.S1_s_at11/1112+27440868..27443689D-mannose binding lectin family protein, expressed
LOC_Os12g44320Os.55718.1.S1_x_at11/1112+27440868..27443689D-mannose binding lectin family protein, expressed
LOC_Os12g44320Os.55718.1.S1_at11/1112+27440868..27443689D-mannose binding lectin family protein, expressed
LOC_Os12g44330Os.17376.2.S1_at11/1112+27446516..27452843Protein kinase domain containing protein, expressed
LOC_Os12g44330Os.17376.2.S1_x_at11/1112+27446516..27452843Protein kinase domain containing protein, expressed
LOC_Os12g44340Os.26364.1.S1_at11/1112+27453510..27457977expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0005451molecular_functionmonovalent cation:proton antiporter activity
GO:0015385molecular_functionsodium:hydrogen antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10071.1.S1_at--529--10531Chr12:27430490..27430514 (25 bp)
TTCATGCCTTTGTAATTCTTTCCCA
LOC_Os12g44300
Os.10071.1.S1_at--197--9751Chr12:27430502..27430526 (25 bp)
TAATTCTTTCCCATATACTCCTTCT
LOC_Os12g44300
Os.10071.1.S1_at--1038--9311Chr12:27430510..27430534 (25 bp)
TCCCATATACTCCTTCTATTTTCAT
LOC_Os12g44300
Os.10071.1.S1_at--1110--3751Chr12:27430548..27430572 (25 bp)
CTCTTCCTCTTCATTAGCTTATTAC
LOC_Os12g44300
Os.10071.1.S1_at--1145--4871Chr12:27430564..27430588 (25 bp)
GCTTATTACTAATTGCAACCCATAT
LOC_Os12g44300
Os.10071.1.S1_at--254--5151Chr12:27430578..27430602 (25 bp)
GCAACCCATATACTTACCTAACTTA
LOC_Os12g44300
Os.10071.1.S1_at--23--6771Chr12:27430661..27430685 (25 bp)
GTTAAGCAAACCTAGCTCGATCCCT
NONE
Os.10071.1.S1_at--953--9991Chr12:27430673..27430697 (25 bp)
TAGCTCGATCCCTTGTATACATACA
NONE
Os.10071.1.S1_at--1024--6091Chr12:27430701..27430725 (25 bp)
GAGTCGTACATATGTCATACCTAGA
NONE
Os.10071.1.S1_at--988--1051Chr12:27430728..27430752 (25 bp)
AGGTGGCAAAGTTCATCATTTTCAA
NONE
Os.10071.1.S1_at--574--1331Chr12:27430761..27430784 (24 bp)
AGAGGGCCTTAATTCAGAGTTGTGC
NONE
Target Sequence 
TTCATGCCTTTGTAATTCTTTCCCATATACTCCTTCTATTTTCATTACCCCTACCTCCCTCTTCCTCTTCATTAGCTTAT
TACTAATTGCAACCCATATACTTACCTAACTTACATTTATATATGCCTGTTTTTGGAGGAGTAAATGTAATTAGAAGATT
AAATACTTCCAGTTAAGCAAACCTAGCTCGATCCCTTGTATACATACAAAAGAGTCGTACATATGTCATACCTAGAGAAG
GTGGCAAAGTTCATCATTTTCAAGTTTGAATAGAGGGCCTTAATTCAGAGTTGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10071.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis