Browse Element(s) Details


Os.26364.1.S1_at

Description gb:AK066694.1
DB_XREF= gi:32976712
TID=Os.26364.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26364 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 29941 putative myosin heavy chain mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074D12, full insert sequence.
FL= gb:AK066694.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4434011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g44300OsAffx.32187.1.S1_s_at11/1112+27428036..27430667Sodium/hydrogen exchanger family protein, expressed
LOC_Os12g44300Os.10071.1.S1_at6/1112+27428036..27430667Sodium/hydrogen exchanger family protein, expressed
LOC_Os12g44310Os.10598.1.S1_at10/1112+27431232..274384309,10-9',10' carotenoid cleavage dioxygenase 1, putative, expressed
LOC_Os12g44320OsAffx.20117.1.S1_s_at11/1112+27440868..27443689D-mannose binding lectin family protein, expressed
LOC_Os12g44320Os.55718.1.S1_x_at11/1112+27440868..27443689D-mannose binding lectin family protein, expressed
LOC_Os12g44320Os.55718.1.S1_at11/1112+27440868..27443689D-mannose binding lectin family protein, expressed
LOC_Os12g44330Os.17376.2.S1_at11/1112+27446516..27452843Protein kinase domain containing protein, expressed
LOC_Os12g44330Os.17376.2.S1_x_at11/1112+27446516..27452843Protein kinase domain containing protein, expressed
LOC_Os12g44340Os.26364.1.S1_at11/1112+27453510..27457977expressed protein
LOC_Os12g44350Os.6379.1.S1_at1/1112+27458264..27459555Actin-1, putative, expressed
LOC_Os12g44360Os.53872.1.S1_at11/1112+27462128..27474827Plasma membrane Na+/H+ antiporter, putative, expressed
LOC_Os12g44360Os.7094.1.S1_a_at11/1112+27462128..27474827Plasma membrane Na+/H+ antiporter, putative, expressed
LOC_Os12g44370Os.16279.1.S1_at11/1112+27479011..27480174expressed protein
LOC_Os12g44380Os.26353.1.S1_at11/1112+27480325..27484463sucrose/H+ symporter family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0005874cellular_componentmicrotubule
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0008017molecular_functionmicrotubule binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26364.1.S1_at--638--1011Chr12:27457312..27457336 (25 bp)
AGGTTTGGTAGTTCAAGTTCGCAGC
LOC_Os12g44340
Os.26364.1.S1_at--933--1091Chr12:27457470..27457494 (25 bp)
AGTGGTTCAGCACGCAATATGTGAT
LOC_Os12g44340
Os.26364.1.S1_at--37--1711Chr12:27457520..27457544 (25 bp)
AGCCAACCCTTACGAAGCATTCAAA
LOC_Os12g44340
Os.26364.1.S1_at--678--3171Chr12:27457559..27457583 (25 bp)
AATTGGGTGCTTCGACATCATATCC
LOC_Os12g44340
Os.26364.1.S1_at--967--3553Chr12:27457574..27457598 (25 bp)
CATCATATCCTTGTCTAGTTGTTGA
LOC_Os12g44340
Os.26364.1.S1_at--515--1871Chr12:27457619..27457643 (25 bp)
ACGAGCTGCTGATTGATGTCTGGAG
LOC_Os12g44340
Os.26364.1.S1_at--393--6751Chr12:27457659..27457683 (25 bp)
GTTACATTTTTACACGTCGAGCCGA
LOC_Os12g44340
Os.26364.1.S1_at--2--4051Chr12:27457694..27457718 (25 bp)
CGATTAGCCTATATCTCGTGGGAAT
LOC_Os12g44340
Os.26364.1.S1_at--1090--3031Chr12:27457716..27457740 (25 bp)
AATCGCGACGACTACTCTGTCTAAT
LOC_Os12g44340
Os.26364.1.S1_at--1098--411Chr12:27457826..27457850 (25 bp)
ATCATCGTTGCCTGGTGCTGTATAG
LOC_Os12g44340
Os.26364.1.S1_at--72--6871Chr12:27457851..27457875 (25 bp)
GTTTGGTGAGCCCATGCATGCATAT
LOC_Os12g44340
Target Sequence 
AGGTTTGGTAGTTCAAGTTCGCAGCTGCCACCTGGCAGGACATTNGCCTCGGNAGTGGTTCAGCACGCAATATGTGATGC
AAGCGAGGAACACGGCGGCAACCAGCCAACCCTTACGAAGCATTCAAATAAGAGGAGAGCTTAATTGGGTGCTTCGACAT
CATATCCTTGTCTAGTTGTTGAATGTTGGATTAGTAGTGATGACGAGCTGCTGATTGATGTCTGGAGAAGATGGATCGAT
CGGTTACATTTTTACACGTCGAGCCGAGAAGACGGAGCGATTAGCCTATATCTCGTGGGAATCGCGACGACTACTCTGTC
TAATTAACCTGGCAAATTAAGCTAGTCTTATTTTTAACCTTTGGTTTCTTGATGAGATTTGGTGGTGTGTTTTTTTTTNN
GGCAATCATCCATCATCGTTGCCTGGTGCTGTATAGGTTTGGTGAGCCCATGCATGCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26364.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis