Browse Element(s) Details


Os.16279.1.S1_at

Description gb:AK061015.1
DB_XREF= gi:32971033
TID=Os.16279.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16279 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001A16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-204-B08, full insert sequence.
FL= gb:AK061015.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4437011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g44340Os.26364.1.S1_at11/1112+27453510..27457977expressed protein
LOC_Os12g44350Os.6379.1.S1_at1/1112+27458264..27459555Actin-1, putative, expressed
LOC_Os12g44360Os.53872.1.S1_at11/1112+27462128..27474827Plasma membrane Na+/H+ antiporter, putative, expressed
LOC_Os12g44360Os.7094.1.S1_a_at11/1112+27462128..27474827Plasma membrane Na+/H+ antiporter, putative, expressed
LOC_Os12g44370Os.16279.1.S1_at11/1112+27479011..27480174expressed protein
LOC_Os12g44380Os.26353.1.S1_at11/1112+27480325..27484463sucrose/H+ symporter family protein, expressed
LOC_Os12g44390Os.8335.2.S1_at11/1112+27491340..27496040RecF/RecN/SMC N terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16279.1.S1_at--952--3512Chr12:27479657..27479681 (25 bp)
CATGTTCCTCCTCCAGGAAGAAGAG
LOC_Os12g44370
Os.16279.1.S1_at--261--7591Chr12:27479694..27479718 (25 bp)
GGGCTTGTGTACTACGAGCCGCACT
LOC_Os12g44370
Os.16279.1.S1_at--584--5871Chr12:27479709..27479733 (25 bp)
GAGCCGCACTGCGTGTACGACCGGT
LOC_Os12g44370
Os.16279.1.S1_at--841--6971Chr12:27479723..27479747 (25 bp)
GTACGACCGGTCCTTCCTGGAGAAG
LOC_Os12g44370
Os.16279.1.S1_at--1065--4571Chr12:27479751..27479775 (25 bp)
GCGCTGCGTGCCGACGTGGTAATCA
LOC_Os12g44370
Os.16279.1.S1_at--409--1891Chr12:27479764..27479788 (25 bp)
ACGTGGTAATCACGCCCGTCGTGAA
LOC_Os12g44370
Os.16279.1.S1_at--329--3211Chr12:27479863..27479887 (25 bp)
CAAGGTACGTGGTCCCAATGAGCAA
LOC_Os12g44370
Os.16279.1.S1_at--603--491Chr12:27479961..27479985 (25 bp)
ATGCTGGCCGACACGCTCCCGGAGG
LOC_Os12g44370
Os.16279.1.S1_at--410--6571Chr12:27480046..27480070 (25 bp)
GATTCATTCCAATCCATGCATGCCC
LOC_Os12g44370
Os.16279.1.S1_at--237--2211Chr12:27480097..27480121 (25 bp)
ACAACATGGACTATATAGGGCGACT
LOC_Os12g44370
Os.16279.1.S1_at--700--7571Chr12:27480114..27480138 (25 bp)
GGGCGACTGTAGCTGTATATCTCAA
LOC_Os12g44370
Target Sequence 
CATGTTCCTCCTCCAGGAAGAAGAGGAAGACGCCAAGGGGCTTGTGTACTACGAGCCGCACTGCGTGTACGACCGGTCCT
TCCTGGAGAAGGAGGCGCTGCGTGCCGACGTGGTAATCACGCCCGTCGTGAAGCAGCTCCTCCCGGCCAACTTCACCCTC
GTCGCCGGGCAGGAGGACGCCGTGGAGCTGGCCAGCCTGCTGCGGGCAAGGTACGTGGTCCCAATGAGCAACGGCGACGT
GGACGCCAAGGGCCTCCTCACCGCCGTCGTCGCCACCGAGGGTACGGTGGAGGCCTTCAAGGACATGCTGGCCGACACGC
TCCCGGAGGCTCAGCTGCTCCACCCAACGCCCGGCGTCCCACTCCACATCCACCTCCCCCACCTTACTTGATTCATTCCA
ATCCATGCATGCCCTCCCTCCATTTAATTTCCTACACATAACAACATGGACTATATAGGGCGACTGTAGCTGTATATCTC
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16279.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis