Browse Element(s) Details


Os.8335.2.S1_at

Description gb:AK065733.1
DB_XREF= gi:32975751
TID=Os.8335.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8335 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013038C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013038C11, full insert sequence.
FL= gb:AK065733.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4439011/11RecF/RecN/SMC N terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g44360Os.53872.1.S1_at11/1112+27462128..27474827Plasma membrane Na+/H+ antiporter, putative, expressed
LOC_Os12g44360Os.7094.1.S1_a_at11/1112+27462128..27474827Plasma membrane Na+/H+ antiporter, putative, expressed
LOC_Os12g44370Os.16279.1.S1_at11/1112+27479011..27480174expressed protein
LOC_Os12g44380Os.26353.1.S1_at11/1112+27480325..27484463sucrose/H+ symporter family protein, expressed
LOC_Os12g44390Os.8335.2.S1_at11/1112+27491340..27496040RecF/RecN/SMC N terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007059biological_processchromosome segregation
GO:0000796cellular_componentcondensin complex
GO:0005634cellular_componentnucleus
GO:0008278cellular_componentcohesin complex
GO:0005215molecular_functiontransporter activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8335.2.S1_at--55--6991Chr12:27491693..27491717 (25 bp)
GTACCTCTTTTGTGACTTTTACTCA
LOC_Os12g44390
Os.8335.2.S1_at--838--5691Chr12:27491680..27491704 (25 bp)
GACTTTTACTCAGCTGATTCTTCAA
LOC_Os12g44390
Os.8335.2.S1_at--19--3871Chr12:27491667..27491691 (25 bp)
CTGATTCTTCAACATTTTTCTTATA
LOC_Os12g44390
Os.8335.2.S1_at--1099--151Chr12:27491654..27491678 (25 bp)
ATTTTTCTTATATCGGGAGAGCTCA
LOC_Os12g44390
Os.8335.2.S1_at--1020--8051Chr12:27491639..27491663 (25 bp)
GGAGAGCTCATTATATTATCTGCAG
LOC_Os12g44390
Os.8335.2.S1_at--723--10211Chr12:27491626..27491650 (25 bp)
TATTATCTGCAGTAGTCAATTGTAA
LOC_Os12g44390
Os.8335.2.S1_at--1047--5331Chr12:27491560..27491584 (25 bp)
TACGTAGAACCTCTTTTAATGAAAT
LOC_Os12g44390
Os.8335.2.S1_at--147--4911Chr12:27491525..27491549 (25 bp)
GCTTCACGTGAACTGTAAACTGTTG
LOC_Os12g44390
Os.8335.2.S1_at--814--3591Chr12:27491480..27491504 (25 bp)
CATTCAAATGGATGTGACGGTCACA
LOC_Os12g44390
Os.8335.2.S1_at--1007--6571Chr12:27491403..27491427 (25 bp)
GATTCTGTTGACTCACATCCATTCA
LOC_Os12g44390
Os.8335.2.S1_at--381--3531Chr12:27491388..27491412 (25 bp)
CATCCATTCAAATTAGTCCCATGTA
LOC_Os12g44390
Target Sequence 
GTACCTCTTTTGTGACTTTTACTCAGCTGATTCTTCAACATTTTTCTTATATCGGGAGAGCTCATTATATTATCTGCAGT
AGTCAATTGTAATACTTATTTTTTTTTTCAAAGCGTACCTTTGGAAATTAAAATACGTAGAACCTCTTTTAATGAAATAA
AATGAATAGCTTCACGTGAACTGTAAACTGTTGAAAGAAGTTTGAACTGATTCCATTCAAATGGATGTGACGGTCACATG
GAGGGAGAGTTTGTGAGTAGGGCATTTGATAGATCAATATCATATTTGGGGATTCTGTTGACTCACATCCATTCAAATTA
GTCCCATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8335.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis