Browse Element(s) Details


Os.26353.1.S1_at

Description gb:AB091672.1
DB_XREF= gi:29467451
GEN=OsSUT2
TID=Os.26353.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26353 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsSUT2 mRNA for sucrose transporter, complete cds.
PROD=sucrose transporter
FL= gb:AK067030.1 gb:AK109461.1 gb:AB091672.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4438011/11sucrose/H+ symporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g44340Os.26364.1.S1_at11/1112+27453510..27457977expressed protein
LOC_Os12g44350Os.6379.1.S1_at1/1112+27458264..27459555Actin-1, putative, expressed
LOC_Os12g44360Os.53872.1.S1_at11/1112+27462128..27474827Plasma membrane Na+/H+ antiporter, putative, expressed
LOC_Os12g44360Os.7094.1.S1_a_at11/1112+27462128..27474827Plasma membrane Na+/H+ antiporter, putative, expressed
LOC_Os12g44370Os.16279.1.S1_at11/1112+27479011..27480174expressed protein
LOC_Os12g44380Os.26353.1.S1_at11/1112+27480325..27484463sucrose/H+ symporter family protein, expressed
LOC_Os12g44390Os.8335.2.S1_at11/1112+27491340..27496040RecF/RecN/SMC N terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009915biological_processphloem loading
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0008506molecular_functionsucrose:hydrogen symporter activity
GO:0008515molecular_functionsucrose transporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26353.1.S1_at--559--3591Chr12:27481975..27481999 (25 bp)
CATTGCTTCCCTGGTAGTTTTTACA
LOC_Os12g44380
Os.26353.1.S1_at--1117--10471Chr12:27481955..27481979 (25 bp)
TTACAATTTTAGGAGCGCCCCTGGC
LOC_Os12g44380
Os.26353.1.S1_at--60--5191Chr12:27481827..27481851 (25 bp)
GCAATGGCTGCTAGTCGGGTTGAAA
LOC_Os12g44380
Os.26353.1.S1_at--218--10871Chr12:27481692..27481714 (23 bp)
TTGGCTATTGTCATACCACAGGTTA
LOC_Os12g44380
Os.26353.1.S1_at--915--10391Chr12:27480905..27480929 (25 bp)
TTATTGTGTCACTGGGTAGCGGGCC
LOC_Os12g44380
Os.26353.1.S1_at--193--1871Chr12:27480784..27480808 (25 bp)
ACGAGCCCGCATTGCATCAAGGAGG
LOC_Os12g44380
Os.26353.1.S1_at--447--9851Chr12:27480729..27480753 (25 bp)
TAAATTGTCGGCCATTCTTTGCAAT
LOC_Os12g44380
Os.26353.1.S1_at--38--1331Chr12:27480694..27480718 (25 bp)
AGAGGCACTCGGAACGCTATGCAGT
LOC_Os12g44380
Os.26353.1.S1_at--745--7951Chr12:27480631..27480655 (25 bp)
GGATAATGCTTGCTTTCTCCATGAG
LOC_Os12g44380
Os.26353.1.S1_at--205--10391Chr12:27480602..27480626 (25 bp)
TTTTGCCTTTTTCATGCCGGATCAT
LOC_Os12g44380
Os.26353.1.S1_at--901--6431Chr12:27480583..27480607 (25 bp)
GATCATCATATGCTGTCGTACATTG
LOC_Os12g44380
Target Sequence 
CATTGCTTCCCTGGTAGTTTTTACAATTTTAGGAGCGCCCCTGGCGATCACGTACAGTATACCATATGCAATGGCTGCTA
GTCGGGTTGAAAATCTGGGACTTGGCCAAGGTCTAGCAATGGGCATTCTTAATTTGGCTATTGTCATACCACAGGTTATT
GTGTCACTGGGTAGCGGGCCCTGGGACCAACTGTTTGGTGGTGGCAATGCACCAGCCTTTGCAGTGGCTGCTGCTGCATC
TTTTATCGGTGGGCTGGTGGCTATTNTGGGCCTTCCACGAGCCCGCATTGCATCAAGGAGGAGAGGTCACCGATAAGAAT
ATTGCTACATATAAATTGTCGGCCATTCTTTGCAATTCGACTCATAAGAGGCACTCGGAACGCTATGCAGTGCATGGGGG
AATTGTATATTATCTCCGAATCAAGAAGGGGATAATGCTTGCTTTCTCCATGAGCTATTTTTGCCTTTTTCATGCCGGAT
CATCATATGCTGTCGTACATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26353.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis