Browse Element(s) Details


Os.17376.2.S1_x_at

Description gb:AK060641.1
DB_XREF= gi:32970659
TID=Os.17376.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17376 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-E10, full insert sequence.
FL= gb:AK060641.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4433011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g44300OsAffx.32187.1.S1_s_at11/1112+27428036..27430667Sodium/hydrogen exchanger family protein, expressed
LOC_Os12g44300Os.10071.1.S1_at6/1112+27428036..27430667Sodium/hydrogen exchanger family protein, expressed
LOC_Os12g44310Os.10598.1.S1_at10/1112+27431232..274384309,10-9',10' carotenoid cleavage dioxygenase 1, putative, expressed
LOC_Os12g44320OsAffx.20117.1.S1_s_at11/1112+27440868..27443689D-mannose binding lectin family protein, expressed
LOC_Os12g44320Os.55718.1.S1_x_at11/1112+27440868..27443689D-mannose binding lectin family protein, expressed
LOC_Os12g44320Os.55718.1.S1_at11/1112+27440868..27443689D-mannose binding lectin family protein, expressed
LOC_Os12g44330Os.17376.2.S1_at11/1112+27446516..27452843Protein kinase domain containing protein, expressed
LOC_Os12g44330Os.17376.2.S1_x_at11/1112+27446516..27452843Protein kinase domain containing protein, expressed
LOC_Os12g44340Os.26364.1.S1_at11/1112+27453510..27457977expressed protein
LOC_Os12g44350Os.6379.1.S1_at1/1112+27458264..27459555Actin-1, putative, expressed
LOC_Os12g44360Os.53872.1.S1_at11/1112+27462128..27474827Plasma membrane Na+/H+ antiporter, putative, expressed
LOC_Os12g44360Os.7094.1.S1_a_at11/1112+27462128..27474827Plasma membrane Na+/H+ antiporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17376.2.S1_x_at--351--5671Chr12:27448453..27448477 (25 bp)
GACATGCTTCGGCTTCATATGGAAC
LOC_Os12g44330
Os.17376.2.S1_x_at--486--2311Chr12:27448272..27448294 (23 bp)
AAAGGGTGCCTTTACGATGCAACAT
LOC_Os12g44330
Os.17376.2.S1_x_at--1072--3651Chr12:27448230..27448254 (25 bp)
CTTTCATGCCACTGAGGAGGATCCT
LOC_Os12g44330
Os.17376.2.S1_x_at--1119--3231Chr12:27447957..27447981 (25 bp)
CAAGCACTTAGCCATCCATTTATCA
LOC_Os12g44330
Os.17376.2.S1_x_at--219--6651Chr12:27447915..27447939 (25 bp)
GTTGATTACTCTTGGCATTGCTAAC
LOC_Os12g44330
Os.17376.2.S1_x_at--825--9871Chr12:27447872..27447896 (25 bp)
TACATTTTGGGTCGCTCTTGTCTAA
LOC_Os12g44330
Os.17376.2.S1_x_at--517--431Chr12:27447848..27447872 (25 bp)
ATCATTGGCATTTCTGTCTTGTGTC
LOC_Os12g44330
Os.17376.2.S1_x_at--561--851Chr12:27447771..27447795 (25 bp)
ATGGCTGTCTTACAGACCTTGGTGC
LOC_Os12g44330
Os.17376.2.S1_x_at--299--10711Chr12:27447719..27447743 (25 bp)
TTGCTTGTAAGACAACTGGCCAGCT
LOC_Os12g44330
Os.17376.2.S1_x_at--1000--3891Chr12:27447696..27447720 (25 bp)
CTGGCATTTCATTACCTGTATACAT
LOC_Os12g44330
Os.17376.2.S1_x_at--330--1771Chr12:27447683..27447707 (25 bp)
ACCTGTATACATTCTTTCCTATGGA
LOC_Os12g44330
Target Sequence 
GACATGCTTCGGCTTCATATGGAACTGAAGGGCCCCTTCCCCAAGAAAATGCTTCGAAAGGGTGCCTTTACGATGCAACA
TTTTGACCAAGATCTCAACTTTCATGCCACTGAGGAGGATCCTGTGACTAAAAAGGCTGTGACAAGGATGATTTTGAACA
TTAAGCCAAAGGATATTGGTTCCTTGATTTCAAACTTCCCTGGCGAGGATCCAAAAATGCTATCCAACTTTAAAGATCTT
CTTGAAAAAATATTTGTCTTAGATCCAGAAAAGAGGATAACCATATCACAAGCACTTAGCCATCCATTTATCACTGGCAA
GTGAAAAGATGTTGATTACTCTTGGCATTGCTAACTTAGCATACCTTGTAAACTACATTTTGGGTCGCTCTTGTCTAATC
ATTGGCATTTCTGTCTTGTGTCCTCGGAGCTATGAGATCAGAGTATGTGGGCGAAGCTCGGAAATATGGAAGAGATGGCT
GTCTTACAGACCTTGGTGCATGCAGTTATCATTTGGATATGTTCTGTTGCTTGTAAGACAACTGGCCAGCTGGCATTTCA
TTACCTGTATACATTCTTTCCTATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17376.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis