Browse Element(s) Details


Os.18139.1.S1_at

Description gb:AK071577.1
DB_XREF= gi:32981600
TID=Os.18139.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18139 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023107K05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023107K05, full insert sequence.
FL= gb:AK071577.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3603011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36010OsAffx.32048.1.S1_at11/1112+22009539..22009883hypothetical protein
LOC_Os12g36020NANA12+22012783..22014060retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g36030Os.18139.1.S1_at11/1112+22014244..22020753expressed protein
LOC_Os12g36030Os.20279.1.S1_at11/1112+22014244..22020753expressed protein
LOC_Os12g36030Os.57304.1.S1_at11/1112+22014244..22020753expressed protein
LOC_Os12g36030Os.51777.1.S1_at2/1112+22014244..22020753expressed protein
LOC_Os12g36030OsAffx.10695.1.S1_at2/1112+22014244..22020753expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18139.1.S1_at--1011--5891Chr12:22016644..22016668 (25 bp)
GAGCTGTTGCTTGTTTTGCCGCTGC
LOC_Os12g36030
Os.18139.1.S1_at--232--8791Chr12:22016655..22016679 (25 bp)
TGTTTTGCCGCTGCGACTCGCCGTT
LOC_Os12g36030
Os.18139.1.S1_at--822--3851Chr12:22016742..22016766 (25 bp)
CTGTTCTCGGCCAGGGTTAGGATTG
LOC_Os12g36030
Os.18139.1.S1_at--509--8531Chr12:22016765..22016789 (25 bp)
TGGAGCAGCATAGAGAACAAGCGAC
LOC_Os12g36030
Os.18139.1.S1_at--407--6871Chr12:22016816..22016840 (25 bp)
GTATTTTTCTTTCAACTACTTGCAA
LOC_Os12g36030
Os.18139.1.S1_at--317--3271Chr12:22016828..22016852 (25 bp)
CAACTACTTGCAAGCGTGAGCTTCT
LOC_Os12g36030
Os.18139.1.S1_at--985--7371Chr12:22016843..22016867 (25 bp)
GTGAGCTTCTTCAGTTGACCCAAAT
LOC_Os12g36030
Os.18139.1.S1_at--594--7991Chr12:22016894..22016918 (25 bp)
GGATGTACGATCCTTCATTATTTCT
LOC_Os12g36030
Os.18139.1.S1_at--570--4311Chr12:22016905..22016929 (25 bp)
CCTTCATTATTTCTACATCCTCCAT
LOC_Os12g36030
Os.18139.1.S1_at--415--6071Chr12:22016938..22016962 (25 bp)
GAGTTAACCTATTGTTCAGATTTGC
LOC_Os12g36030
Os.18139.1.S1_at--533--6751Chr12:22016951..22016975 (25 bp)
GTTCAGATTTGCAGTACTAGCATAT
LOC_Os12g36030
Target Sequence 
GAGCTGTTGCTTGTTTTGCCGCTGCGACTCGCCGTTCCTAGCCTCGCCGCCGACATATCCACTCACGAGCTCGCACCCGC
CACCGTNGTCGCCATCGCCTGTTCTCGGCCAGGGTTAGGATTGGAGCAGCATAGAGAACAAGCGACGACTACNTAACCTA
GTATATATAGTAGTATTTTTCTTTCAACTACTTGCAAGCGTGAGCTTCTTCAGTTGACCCAAATTGAACAACATATTATG
GAATTTATCAGGATGTACGATCCTTCATTATTTCTACATCCTCCATTTCAAAATGAGTTAACCTATTGTTCAGATTTGCA
GTACTAGCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18139.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis