Browse Element(s) Details


Os.1814.1.S1_a_at

Description gb:AB059416.1
DB_XREF= gi:13568427
GEN=OsGA2ox1
TID=Os.1814.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1814 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for OsGA2ox1, complete cds.
PROD=OsGA2ox1
FL= gb:AB059416.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0667011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06650Os.24080.1.A1_at11/115+3412487..3416256expressed protein
LOC_Os05g06660Os.18819.1.S1_at11/115+3417229..3421788Serine carboxypeptidase II precursor, putative, expressed
LOC_Os05g06670Os.1814.1.S1_a_at11/115+3437635..3443885oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g06680Os.1814.3.A1_at11/115+3441606..3446708expressed protein
LOC_Os05g06690Os.52169.1.S1_at11/115+3450334..3463103HECT-domain-containing protein, putative, expressed
LOC_Os05g06700Os.6413.1.S1_a_at11/115+3467185..3470310FAM18-like protein At1g09330, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045487biological_processgibberellic acid catabolism
GO:0045543molecular_functiongibberellin 2-beta-dioxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1814.1.S1_a_at--778--1051Chr05:3443313..3443337 (25 bp)
AGGGTAATTGCAACCGCCTGCAGGC
LOC_Os05g06670
Os.1814.1.S1_a_at--600--911Chr05:3443340..3443364 (25 bp)
AGGCTGTCCACAATATACTTCGCAT
LOC_Os05g06670
Os.1814.1.S1_a_at--483--5251Chr05:3443383..3443407 (25 bp)
GAATCTCGGCACTCCCAGAGACAAT
LOC_Os05g06670
Os.1814.1.S1_a_at--349--311Chr05:3443429..3443453 (25 bp)
ATACCGATCATTCACCTGGGCTGAG
LOC_Os05g06670
Os.1814.1.S1_a_at--341--2771Chr05:3443457..3443481 (25 bp)
AAGACGACAATGTACTCACTCCGCC
LOC_Os05g06670
Os.1814.1.S1_a_at--337--3371Chr05:3443489..3443513 (25 bp)
CAGCCGCCTAGAACTCTTCAAAATT
LOC_Os05g06670
Os.1814.1.S1_a_at--1141--9031Chr05:3443572..3443596 (25 bp)
TGCAGACGATGCCTATGGACCAGTG
LOC_Os05g06670
Os.1814.1.S1_a_at--623--2451Chr05:3443623..3443647 (25 bp)
AAAATTTTGGCTCTCTGGCAGTCTG
LOC_Os05g06670
Os.1814.1.S1_a_at--61--8511Chr05:3443638..3443662 (25 bp)
TGGCAGTCTGGCTACTATCGTCAGA
LOC_Os05g06670
Os.1814.1.S1_a_at--179--1171Chr05:3443747..3443771 (25 bp)
AGTAATGTACTGTCGCCTTTTCAGC
LOC_Os05g06670
Os.1814.1.S1_a_at--462--1571Chr05:3443769..3443793 (25 bp)
AGCTAACTATCCATGTTCTCTCTTA
LOC_Os05g06670
Target Sequence 
AGGGTAATTGCAACCGCCTGCAGGCCAAGGCTGTCCACAATATACTTCGCATCACCACCCCTGCATGCACGAATCTCGGC
ACTCCCAGAGACAATCACAGCCAGCAGCCCACGCCGATACCGATCATTCACCTGGGCTGAGTACAAGACGACAATGTACT
CACTCCGCCTGAGCCACAGCCGCCTAGAACTCTTCAAAATTGACGATGATGACAGCGACAATGCCAGTGAGGGAAAAGCA
TAGGAATTGCTGGTTAAATTGCAGACGATGCCTATGGACCAGTGGGGATTAGGAAGCTGAAACTGTCCCCAAAATTTTGG
CTCTCTGGCAGTCTGGCTACTATCGTCAGATATCTCACTATTATGATGGTGTAGTGCCTAAGTTGACGGGTGTGTAATAT
CGTTAGCAGTCTACAGAAGCTATGGTTGTACGGAAGTAATGTACTGTCGCCTTTTCAGCTAACTATCCATGTTCTCTCTT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1814.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis