Browse Element(s) Details


Os.18191.2.S1_at

Description gb:NM_186518.1
DB_XREF= gi:34900121
TID=Os.18191.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.18191 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GENSCAN etc. (OJ1116_C08.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GENSCAN etc. (OJ1116_C08.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g203102/11hypothetical protein
LOC_Os07g316001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g20290NANA7+11703061..11703297hypothetical protein
LOC_Os07g20300NANA7+11710779..11712168Zinc knuckle family protein
LOC_Os07g20310Os.18191.2.S1_at2/117+11720586..11721059hypothetical protein
LOC_Os07g20320Os.46862.1.S1_at1/117+11724444..11725670hypothetical protein
LOC_Os07g20330OsAffx.20329.1.S1_at2/117+11726019..11730431retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g20330OsAffx.22385.1.S1_x_at1/117+11726019..11730431retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g20340Os.52029.1.S1_at11/117+11737030..11739374heavy metal-associated domain containing protein, expressed
LOC_Os07g20360Os.10263.1.S1_at2/117+11743858..11749681Zinc knuckle family protein
LOC_Os07g20360OsAffx.27770.1.S1_x_at1/117+11743858..11749681Zinc knuckle family protein
LOC_Os07g20360Os.54691.1.S1_x_at1/117+11743858..11749681Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18191.2.S1_at--18--8053Chr07:6983639..6983730 (25 bp)
GGAGATGCTATCAGCGTGAGGACCA
NONE
Os.18191.2.S1_at--68--9673Chr07:6983716..6983740 (25 bp)
TCAGCGTGAGGACCAGCACTGGCAT
NONE
Os.18191.2.S1_at--79--6191Chr07:6315949..6315973 (25 bp)
GAGGACCAGCACTGGCATTTGCGGA
NONE
Os.18191.2.S1_at--993--1491Chr07:6315956..6315980 (25 bp)
AGCACTGGCATTTGCGGACGCGTCC
NONE
Os.18191.2.S1_at--501--191Chr07:6315965..6315989 (25 bp)
ATTTGCGGACGCGTCCACGCCGTGT
NONE
Os.18191.2.S1_at--998--611Chr07:6316068..6316092 (25 bp)
ATGCTGTGGCCAACGTGGTTTGGAA
NONE
Os.18191.2.S1_at--1037--3251Chr07:6316078..6316102 (25 bp)
CAACGTGGTTTGGAATCGGCTAGCG
NONE
Os.18191.2.S1_at--937--10811Chr07:6316104..6316128 (25 bp)
TTGGGCCCGTCGATGCAGCCGCACG
NONE
Os.18191.2.S1_at--306--6414Chr07:6316163..6316187 (25 bp)
GATCTAGCCGCCCTAGGCCCGGGAT
NONE
Os.18191.2.S1_at--995--10031Chr07:6316176..6316200 (25 bp)
TAGGCCCGGGATCTAGCAGATCCAC
NONE
Os.18191.2.S1_at--555--4853Chr07:6316399..6316423 (25 bp)
GCTAGGGTTAGGGACGGCGATCAGA
NONE
Target Sequence 
GGAGATGCTATCAGCGTGAGGACCAGCACTGGCATTTGCGGACGCGTCCACGCCGTGTCGGCACTCTCTCTGACCCGGCT
GCTGCTATGCGCGGAGGAGCACGAGGAAGGGGGGGTGGTCAGCGGGCGGCGCGAGGATGCTGTGGCCAACGTGGTTTGGA
ATCGGCTAGCGGTTGGGCCCGTCGATGCAGCCGCACGCCGTCCTCGAGCCGCCCGGGGATTGCCGCCGCTCGATCTAGCC
GCCCTAGGCCCGGGATCTAGCAGATCCACCGCTCCCGAGCGTGGTGGCGGCGGAGATAGAGGCGGCGTGGTAAGCGGCGA
AGGAGGACGCCGCCGCACGCTGTCATCGCCGATACCCACCGCCGGAGAGGAGAGGAGAGGAAAGGAGAGGAGAATGGATG
GGAGTGTGGCGGCTGAGGGTGGAGAGAGAGAGAGAGAGGAGGGGTGGAGAGGAGGGTTTTATATAGGGCTAGGGTTAGGG
ACGGCGATCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18191.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis