Browse Element(s) Details


Os.52029.1.S1_at

Description gb:AK064565.1
DB_XREF= gi:32974583
TID=Os.52029.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52029 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-D03, full insert sequence.
FL= gb:AK064565.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2034011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g20300NANA7+11710779..11712168Zinc knuckle family protein
LOC_Os07g20310Os.18191.2.S1_at2/117+11720586..11721059hypothetical protein
LOC_Os07g20320Os.46862.1.S1_at1/117+11724444..11725670hypothetical protein
LOC_Os07g20330OsAffx.20329.1.S1_at2/117+11726019..11730431retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g20330OsAffx.22385.1.S1_x_at1/117+11726019..11730431retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g20340Os.52029.1.S1_at11/117+11737030..11739374heavy metal-associated domain containing protein, expressed
LOC_Os07g20360Os.10263.1.S1_at2/117+11743858..11749681Zinc knuckle family protein
LOC_Os07g20360OsAffx.27770.1.S1_x_at1/117+11743858..11749681Zinc knuckle family protein
LOC_Os07g20360Os.54691.1.S1_x_at1/117+11743858..11749681Zinc knuckle family protein
LOC_Os07g20370OsAffx.31892.3.S1_at2/117+11759991..11765699retrotransposon protein, putative, unclassified
LOC_Os07g20370OsAffx.7216.1.S1_at1/117+11759991..11765699retrotransposon protein, putative, unclassified
LOC_Os07g20370OsAffx.31892.1.S1_x_at1/117+11759991..11765699retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0046916biological_processtransition metal ion homeostasis
GO:0005507molecular_functioncopper ion binding
GO:0046872molecular_functionmetal ion binding
GO:0046914molecular_functiontransition metal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52029.1.S1_at--249--1491Chr07:11737557..11737581 (25 bp)
AGCAAGGAGGAGACCCATCACCATC
LOC_Os07g20340
Os.52029.1.S1_at--454--5171Chr07:11737381..11737405 (25 bp)
GCAAGCTACAATGGCGTCGCGGAAG
LOC_Os07g20340
Os.52029.1.S1_at--975--7951Chr07:11737340..11737364 (25 bp)
GGATCACCTGTTCAGAGTTGCTCTC
LOC_Os07g20340
Os.52029.1.S1_at--757--9491Chr07:11737319..11737343 (25 bp)
TCTCCCGAGATCAGTTGTCGCGGTT
LOC_Os07g20340
Os.52029.1.S1_at--919--8971Chr07:11737266..11737290 (25 bp)
TGAACAGCCTCTGCTACAGCTACTA
LOC_Os07g20340
Os.52029.1.S1_at--399--251Chr07:11737229..11737253 (25 bp)
ATATCCGTATCCGTGTCATCAGTAT
LOC_Os07g20340
Os.52029.1.S1_at--494--10151Chr07:11737198..11737222 (25 bp)
TATCCGCAGCAGAACATATACGCCG
LOC_Os07g20340
Os.52029.1.S1_at--128--4531Chr07:11737177..11737201 (25 bp)
GCCGCTGGTAATTATCCTGCAATGT
LOC_Os07g20340
Os.52029.1.S1_at--818--10111Chr07:11737153..11737177 (25 bp)
TATGGGTACTATCCACATCATGTGC
LOC_Os07g20340
Os.52029.1.S1_at--166--6191Chr07:11737126..11737150 (25 bp)
GAGGACTTCAGTGACGCGAACCCAA
LOC_Os07g20340
Os.52029.1.S1_at--844--5411Chr07:11737109..11737133 (25 bp)
GAACCCAAATGTATGTACCGTCATG
LOC_Os07g20340
Target Sequence 
AGCAAGGAGGAGACCCATCACCATCAGACGATGCGCAGGAGAAGAAGGAAGGGGAGGAAGCAGATCAGATGAAGGATCAG
AAAGAAGAGCCGGAAGAGAAGGAGAAGAAGGAAGAACCAGATGAGAAGAACGAAGGAGGCGAAGCTGATGACCTGAAGCC
CCTAACGGAGGACGACGCAAGCTACAATGGCGTCGCGGAAGAGAGCCACAGCACGAAGGATCACCTGTTCAGAGTTGCTC
TCCCGAGATCAGTTGTCGCGGTTGCGCCGCCGGAGAGTGAGAAGATGGCCATGAACAGCCTCTGCTACAGCTACTACTAC
TACCCGGTATATCCGTATCCGTGTCATCAGTATTATCAATATCCGCAGCAGAACATATACGCCGCTGGTAATTATCCTGC
AATGTATGGGTACTATCCACATCATGTGCCAGAGGACTTCAGTGACGCGAACCCAAATGTATGTACCGTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52029.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis