Browse Element(s) Details


Os.18326.1.S1_at

Description gb:AK102648.1
DB_XREF= gi:32987857
TID=Os.18326.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18326 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033100L05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033100L05, full insert sequence.
FL= gb:AK102648.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4531011/11ER lumen protein retaining receptor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45250NANA5+26184282..26185055transposon protein, putative, unclassified
LOC_Os05g45260OsAffx.27317.1.S1_at11/115+26190033..26191248hypothetical protein
LOC_Os05g45270Os.53442.1.S1_at10/115+26193336..26196142ribosomal protein L9, N-terminal domain containing protein, expressed
LOC_Os05g45270OsAffx.4622.1.S1_at1/115+26193336..26196142ribosomal protein L9, N-terminal domain containing protein, expressed
LOC_Os05g45280Os.5747.1.S1_at9/115+26196261..26199588membrane protein, putative, expressed
LOC_Os05g45290OsAffx.15112.1.S1_at11/115+26201544..26202035hypothetical protein
LOC_Os05g45300Os.52229.1.S1_at11/115+26202553..26205166enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os05g45310Os.18326.1.S1_at11/115+26205668..26208715ER lumen protein retaining receptor, putative, expressed
LOC_Os05g45320Os.50603.1.S1_at11/115+26209089..26211365expressed protein
LOC_Os05g45320Os.36280.1.S1_at10/115+26209089..26211365expressed protein
LOC_Os05g45330NANA5+26212287..26213257expressed protein
LOC_Os05g45340OsAffx.27316.1.S1_at11/115+26217143..26223824DNA polymerase III, delta subunit family protein
LOC_Os05g45340OsAffx.7824.1.S1_s_at1/115+26217143..26223824DNA polymerase III, delta subunit family protein
LOC_Os05g45350Os.15152.2.S1_at11/115+26227598..26230909DnaJ domain containing protein, expressed
LOC_Os05g45350Os.15152.1.S1_a_at11/115+26227598..26230909DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006621biological_processprotein retention in ER
GO:0015031biological_processprotein transport
GO:0005801cellular_componentGolgi cis-face
GO:0016021cellular_componentintegral to membrane
GO:0004872molecular_functionreceptor activity
GO:0005046molecular_functionKDEL sequence binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18326.1.S1_at--697--10811Chr05:26206301..26206325 (25 bp)
TTGGTCCAAACAGCTCTTTATGCGG
LOC_Os05g45310
Os.18326.1.S1_at--1144--4671Chr05:26206280..26206304 (25 bp)
GCGGATTTCTTCTACTACTATTTCT
LOC_Os05g45310
Os.18326.1.S1_at--1075--6051Chr05:26206155..26206179 (25 bp)
GAGTTGCCTGCTTGATAGTTCTTCG
LOC_Os05g45310
Os.18326.1.S1_at--625--10051Chr05:26206140..26206164 (25 bp)
TAGTTCTTCGCCACGCCAGAAAATG
LOC_Os05g45310
Os.18326.1.S1_at--1080--6271Chr05:26206016..26206040 (25 bp)
GATGTTCATGTGATGGTTTCCCTTG
LOC_Os05g45310
Os.18326.1.S1_at--165--1231Chr05:26205937..26205961 (25 bp)
AGTTCCTTTTTGGACCTCATACTGA
LOC_Os05g45310
Os.18326.1.S1_at--817--9591Chr05:26205892..26205916 (25 bp)
TCATTTGGCTTGTTGTTTGCAGCTC
LOC_Os05g45310
Os.18326.1.S1_at--685--10271Chr05:26205877..26205901 (25 bp)
TTTGCAGCTCTATTACACTTGGTGT
LOC_Os05g45310
Os.18326.1.S1_at--709--2491Chr05:26205847..26205871 (25 bp)
AACAGTGTGATTTCCGGTGTCTTGT
LOC_Os05g45310
Os.18326.1.S1_at--428--3011Chr05:26205815..26205839 (25 bp)
AATGCACTCCAAACTACTCCGAAAT
LOC_Os05g45310
Os.18326.1.S1_at--339--231Chr05:26205783..26205807 (25 bp)
ATATTGATTGTGCTTCCTGGATCCT
LOC_Os05g45310
Target Sequence 
TTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACTACTATTTCTTAAGTTGGAAGAACAATGTGAAGCTTGAGTTGCC
TGCTTGATAGTTCTTCGCCACGCCAGAAAATGTGCACATCACATGAGAATTATCGNGATTAGTTGATGCTGGCAGAGACT
TGGTAATGAAGTGGGCAGTTGCAATTTGTACTGTTGACTATGAAAATTGATGATGTTCATGTGATGGTTTCCCTTGGCAA
AGGCTATTACGTTTCAGAAGCTAACAGTTGCTACTGCACAGAAGTAGACTAGTTCCTTTTTGGACCTCATACTGAGATGG
AAAATCACACCCAATTCATTTGGCTTGTTGTTTGCAGCTCTATTACACTTGGTGTAAACAAACAGTGTGATTTCCGGTGT
CTTGTAAAAACCAATGCACTCCAAACTACTCCGAAATACCAGAAATATTGATTGTGCTTCCTGGATCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18326.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis