Browse Element(s) Details


Os.18376.1.S1_at

Description gb:AK108872.1
DB_XREF= gi:32994081
TID=Os.18376.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18376 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-152-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-C10, full insert sequence.
FL= gb:AK108872.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2978011/11uncharacterized plant-specific domain TIGR01627 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29750Os.52639.1.S1_at4/1111+16757199..16762215E1-E2 ATPase family protein
LOC_Os11g29760OsAffx.19072.1.S1_at11/1111+16766068..16766564hypothetical protein
LOC_Os11g29770OsAffx.31207.1.S1_at11/1111+16770605..16771999Zinc knuckle family protein
LOC_Os11g29780Os.18376.1.S1_at11/1111+16781300..16782677uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os11g29790OsAffx.31208.1.S1_at11/1111+16788372..16791560Leucine Rich Repeat family protein
LOC_Os11g29800OsAffx.31209.1.S1_at11/1111+16792974..16793385hypothetical protein
LOC_Os11g29810OsAffx.19073.1.S1_x_at11/1111+16796082..16796807hypothetical protein
LOC_Os11g29820NANA11+16805052..16805680hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18376.1.S1_at--836--1231Chr11:16782164..16782188 (25 bp)
AGTTCCTCTGCGAGAGGTTCCGCGT
LOC_Os11g29780
Os.18376.1.S1_at--876--1771Chr11:16782196..16782220 (25 bp)
ACCGGCCGCCTCTGGCATTTCAGGA
LOC_Os11g29780
Os.18376.1.S1_at--102--3771Chr11:16782205..16782229 (25 bp)
CTCTGGCATTTCAGGATCCCGCCGG
LOC_Os11g29780
Os.18376.1.S1_at--789--5311Chr11:16782305..16782329 (25 bp)
GAAGTAAGGATTGCGATTTTTGGAG
LOC_Os11g29780
Os.18376.1.S1_at--1019--4651Chr11:16782359..16782383 (25 bp)
GCGGGTGAAATACAAATACTGCTAC
LOC_Os11g29780
Os.18376.1.S1_at--771--4831Chr11:16782379..16782403 (25 bp)
GCTACTACTACTACGAAAATACGAT
LOC_Os11g29780
Os.18376.1.S1_at--890--9911Chr11:16782398..16782422 (25 bp)
TACGATCGTCGTGTAGGAAATTTCC
LOC_Os11g29780
Os.18376.1.S1_at--93--10231Chr11:16782475..16782499 (25 bp)
TTTGAGGTAAACATTCTGAACAGAG
LOC_Os11g29780
Os.18376.1.S1_at--902--10031Chr11:16782501..16782525 (25 bp)
TAGATGCTAGAGAGTGATTTGAGTC
LOC_Os11g29780
Os.18376.1.S1_at--281--8611Chr11:16782544..16782568 (25 bp)
TGGTGTGAACAACAACACGGTGTGT
LOC_Os11g29780
Os.18376.1.S1_at--851--2491Chr11:16782652..16782676 (25 bp)
AACATTGGTACATCAGGTTAACCTT
LOC_Os11g29780
Target Sequence 
AGTTCCTCTGCGAGAGGTTCCGCGTCGGCGCCACCGGCCGCCTCTGGCATTTCAGGATCCCGCCGGCGTCGCGCCGCGGG
AACGGCACGGCGGCCGCCGGCGGCGCCGGCGCCGGCNATGGGCGGCGACCCTTCTGCNNAGGAAGTAAGGATTGCGATTT
TTGGAGGGGCTTTTTTACAAAATGGCCNCGATTAAGCGGGTGAAATACAAATACTGCTACTACTACTACGAAAATACGAT
CGTCGTGTAGGAAATTTCCGGATTCCNCTANCCTCTGCCACTTGCAAATTCAAAACTTGGGATATTTTAAATTTGAGGTA
AACATTCTGAACAGAGATAGATGCTAGAGAGTGATTTGAGTCNCNCGAGATCACTAAAGTTGGTGTGAACAACAACACGG
TGTGTATCNCTTTTCAGTTTGTAATAATAGAAACAATGAGGTGATTTTGTTTTTTTTTTTTGGTATGAGTACATACTAAT
TTTTGAATAACATTGGTACATCAGGTTAACCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18376.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis