Browse Element(s) Details


Os.52639.1.S1_at

Description gb:AK068468.1
DB_XREF= gi:32978486
TID=Os.52639.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52639 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013156J19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013156J19, full insert sequence.
FL= gb:AK068468.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2949011/11E1-E2 ATPase family protein, expressed
LOC_Os11g297504/11E1-E2 ATPase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29430OsAffx.31200.1.S1_at10/1111+16585193..16586282hypothetical protein
LOC_Os11g29440NANA11+16587250..16588695retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g29450OsAffx.20565.1.S1_at1/1111+16589821..16592736retrotransposon protein, putative, unclassified
LOC_Os11g29470Os.15237.1.S1_at1/1111+16595388..16597465expressed protein
LOC_Os11g29460OsAffx.31201.1.S1_at11/1111+16597398..16598142NA
LOC_Os11g29480OsAffx.7248.1.S1_at10/1111+16602640..16604041hypothetical protein
LOC_Os11g29490Os.52639.1.S1_at11/1111+16606016..16611363E1-E2 ATPase family protein, expressed
LOC_Os11g29500Os.53478.1.S1_at10/1111+16613305..16613976expressed protein
LOC_Os11g29510OsAffx.31202.1.S1_at11/1111+16615145..16618901Protein kinase domain containing protein
LOC_Os11g29520Os.54766.1.S1_at11/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29520Os.54766.1.S1_s_at11/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29520OsAffx.14387.2.S1_s_at11/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29520Os.54638.1.S1_at9/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29520OsAffx.14387.2.S1_at8/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29530OsAffx.29419.3.S1_at2/1111+16633186..16639146retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009935biological_processnutrient import
GO:0015992biological_processproton transport
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
GO:0008553molecular_functionhydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52639.1.S1_at--774--7932Chr11:16761648..16761672 (25 bp)
GGATTTATCTGGCTCTACAACTTTG
LOC_Os11g29750
Os.52639.1.S1_at--247--2532Chr11:16761666..16761690 (25 bp)
AACTTTGTCTTGCTTTTGAGCCTCA
LOC_Os11g29750
Os.52639.1.S1_at--448--5871Chr11:16610567..16610837 (25 bp)
GAGCCTCATGTTGATCTGTGACCTG
LOC_Os11g29490
Os.52639.1.S1_at--442--6472Chr11:16762044..16762068 (25 bp)
GATAACCTGCAGGAGGCTGTTCACT
LOC_Os11g29750
Os.52639.1.S1_at--656--912Chr11:16762155..16762179 (25 bp)
AGGCTTGATTCTTGTCTGGTCGATA
LOC_Os11g29750
Os.52639.1.S1_at--204--9631Chr11:16611011..16611035 (25 bp)
TCATGTCATGAAGGTCCCGCAGCAG
LOC_Os11g29490
Os.52639.1.S1_at--438--5111Chr11:16611043..16611067 (25 bp)
GCACTTGACAGGTAGCCTTGACATT
LOC_Os11g29490
Os.52639.1.S1_at--764--8595Chr11:16611240..16611264 (25 bp)
TGGTCAACTTGTGCGGATGTGTCAT
LOC_Os11g29490
Os.52639.1.S1_at--136--7451Chr11:16611258..16611282 (25 bp)
GTGTCATTCGAATCTGAACTCTCAA
LOC_Os11g29490
Os.52639.1.S1_at--31--7131Chr11:16611315..16611339 (25 bp)
GTCATGTAGGCCCAAACGAGCTCTG
LOC_Os11g29490
Os.52639.1.S1_at--183--1591Chr11:16611333..16611357 (25 bp)
AGCTCTGACCTGTTTTATGCACGGA
LOC_Os11g29490
Target Sequence 
GGATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCTGTGACCTGTGTANCCTTGCAAAGTTCAA
CATATTTGGGATAACCTGCAGGAGGCTGTTCACTGGTTGGACCGAGTGGATGGAGAGGTGCAGGAGGCTGCTCAACAGGG
GTAAAACGTGGATGGAGATGTTGNCCTTAACTGCTATCTCAGGCTTGATTCTTGTCTGGTCGATATATGCATATCATGTC
ATGAAGGTCCCGCAGCAGTAGGGTGGCACTTGACAGGTAGCCTTGACATTAACATATAGCTTTAGGTCGCAAATTAGTGA
CTAAGCAATGTAGCAATGTATATTATTAACCCGTGTAAAGTAAATGTCATCGACATGGTTTTGTTTCTGTCTTTTTCTTT
TTTCTTTTCTTGGGTCCGGGCTTCTACTGCCGTATAATTTTGATAAGAGGGAAGTATATGGGTGGTCAACTTGTGCGGAT
GTGTCATTCGAATCTGAACTCTCAAAATATATTTTGGGTATCAAACTTGTTTTGGGTGTCATGTAGGCCCAAACGAGCTC
TGACCTGTTTTATGCACGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52639.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis