Browse Element(s) Details


Os.53478.1.S1_at

Description gb:AK072876.1
DB_XREF= gi:32982899
TID=Os.53478.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53478 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023144C20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023144C20, full insert sequence.
FL= gb:AK072876.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2950010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29440NANA11+16587250..16588695retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g29450OsAffx.20565.1.S1_at1/1111+16589821..16592736retrotransposon protein, putative, unclassified
LOC_Os11g29470Os.15237.1.S1_at1/1111+16595388..16597465expressed protein
LOC_Os11g29460OsAffx.31201.1.S1_at11/1111+16597398..16598142NA
LOC_Os11g29480OsAffx.7248.1.S1_at10/1111+16602640..16604041hypothetical protein
LOC_Os11g29490Os.52639.1.S1_at11/1111+16606016..16611363E1-E2 ATPase family protein, expressed
LOC_Os11g29500Os.53478.1.S1_at10/1111+16613305..16613976expressed protein
LOC_Os11g29510OsAffx.31202.1.S1_at11/1111+16615145..16618901Protein kinase domain containing protein
LOC_Os11g29520Os.54766.1.S1_at11/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29520Os.54766.1.S1_s_at11/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29520OsAffx.14387.2.S1_s_at11/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29520Os.54638.1.S1_at9/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29520OsAffx.14387.2.S1_at8/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29530OsAffx.29419.3.S1_at2/1111+16633186..16639146retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53478.1.S1_at--378--8931Chr11:16613697..16613721 (25 bp)
TGACCGTGATGGGAGGTGGGCGCGC
LOC_Os11g29500
Os.53478.1.S1_at--735--1031Chr11:16613684..16613708 (25 bp)
AGGTGGGCGCGCGACTACGACGGGA
LOC_Os11g29500
Os.53478.1.S1_at--493--5151Chr11:16613602..16613626 (25 bp)
GCAACGGGACGGCAACGGTGACAGG
LOC_Os11g29500
Os.53478.1.S1_at--338--4711Chr11:16613522..16613546 (25 bp)
GCTGGGCTTCCCAGATCCGGTGCTG
LOC_Os11g29500
Os.53478.1.S1_at--1028--4313Chr06:13608689..13608776 (24 bp)
CCTTCCTCTCTCCTGTTGATGCTGT
NONE
Os.53478.1.S1_at--174--9634Chr05:6787622..6787643 (22 bp)
TCATGTTCAAAATGCTTGTATGCCG
NONE
Os.53478.1.S1_at--258--2291Chr11:16613356..16613380 (25 bp)
AAATGCTTGTATGCCGTGTTCACTT
LOC_Os11g29500
Os.53478.1.S1_at--569--9071Chr11:16613353..16613377 (25 bp)
TGCTTGTATGCCGTGTTCACTTGCA
LOC_Os11g29500
Os.53478.1.S1_at--1101--3611Chr11:16613351..16613375 (25 bp)
CTTGTATGCCGTGTTCACTTGCATG
LOC_Os11g29500
Os.53478.1.S1_at--973--5231Chr11:16613320..16613344 (25 bp)
GAATCTAATGAACTTTGGATGAGGA
LOC_Os11g29500
Os.53478.1.S1_at--152--6315Chr12:19274737..19274758 (22 bp)
GATGAGGATTTGAATCGATGCTCTC
NONE
Target Sequence 
TGACCGTGATGGGAGGTGGGCGCGCGACTACGACGGGAGGCGGTCGTCGGGGGGTTCGGCGATGGCGACGGGATGAGTCG
TCGGGGGACGCGGCGGCAACGGGACGGCAACGGTGACAGGGGCGCGGCGAGCTCCTCCTCCCCCTCCACCTCCCCCTCCC
ACGGTCCCGCTGGCGGCTGGGCTTCCCAGATCCGGTGCTGTGGGGCTTGGTGCGGCGGGAGGACCTCGGTGGCAGTGATG
CTCGGCGATGGGGCTCCGGTGCTGCTCGGTCGGCGACGGCGACGACGACCTCCTTCCTCTCTCCTGTTGATGCTGTTTTT
CTTTTTTTTTTTTCATGTTCAAAATGCTTGTATGCCGTGTTCACTTGCATGTTGATTGAATCTAATGAACTTTGGATGAG
GATTTGAATCGATGCTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53478.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis