Browse Element(s) Details


OsAffx.7248.1.S1_at

Description tigr:9639.m02666
TID=OsAffx.7248.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2948010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29420OsAffx.19068.1.S1_x_at11/1111+16577495..16578663Protease inhibitor/seed storage/LTP family protein
LOC_Os11g29430OsAffx.31200.1.S1_at10/1111+16585193..16586282hypothetical protein
LOC_Os11g29440NANA11+16587250..16588695retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g29450OsAffx.20565.1.S1_at1/1111+16589821..16592736retrotransposon protein, putative, unclassified
LOC_Os11g29470Os.15237.1.S1_at1/1111+16595388..16597465expressed protein
LOC_Os11g29460OsAffx.31201.1.S1_at11/1111+16597398..16598142NA
LOC_Os11g29480OsAffx.7248.1.S1_at10/1111+16602640..16604041hypothetical protein
LOC_Os11g29490Os.52639.1.S1_at11/1111+16606016..16611363E1-E2 ATPase family protein, expressed
LOC_Os11g29500Os.53478.1.S1_at10/1111+16613305..16613976expressed protein
LOC_Os11g29510OsAffx.31202.1.S1_at11/1111+16615145..16618901Protein kinase domain containing protein
LOC_Os11g29520Os.54766.1.S1_at11/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29520Os.54766.1.S1_s_at11/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29520OsAffx.14387.2.S1_s_at11/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29520Os.54638.1.S1_at9/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29520OsAffx.14387.2.S1_at8/1111+16623902..16629488NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7248.1.S1_at--232--3431Chr11:16602726..16602750 (25 bp)
CAGAGCGAATGAGCACGTTGTTCTT
LOC_Os11g29480
OsAffx.7248.1.S1_at--75--8571NONE
TGGATGCCACATTCCAGGTGGCCAG
NONE
OsAffx.7248.1.S1_at--194--8451Chr11:16603696..16603720 (25 bp)
TGGCCAGCGACCGAAGGAGATAACC
LOC_Os11g29480
OsAffx.7248.1.S1_at--444--5071Chr11:16603752..16603776 (25 bp)
GCAGCGGTCGGCAGTGGCACTCACT
LOC_Os11g29480
OsAffx.7248.1.S1_at--774--5371Chr11:16603799..16603823 (25 bp)
GAAGACAACGATGCTGAGCCGATCA
LOC_Os11g29480
OsAffx.7248.1.S1_at--1058--8171Chr11:16603831..16603855 (25 bp)
GGAAGCAGAGGCAGCGTTCGCTCAC
LOC_Os11g29480
OsAffx.7248.1.S1_at--763--5051Chr11:16603841..16603865 (25 bp)
GCAGCGTTCGCTCACAAAGATGCCA
LOC_Os11g29480
OsAffx.7248.1.S1_at--691--2331Chr11:16603856..16603880 (25 bp)
AAAGATGCCACGTGGATCCAGCACC
LOC_Os11g29480
OsAffx.7248.1.S1_at--885--7511Chr11:16603867..16603891 (25 bp)
GTGGATCCAGCACCGGATCTTCCAC
LOC_Os11g29480
OsAffx.7248.1.S1_at--810--951Chr11:16603895..16603919 (25 bp)
AGGACACCCTCAAGCCGAGGTGCTT
LOC_Os11g29480
OsAffx.7248.1.S1_at--667--7551Chr11:16603956..16603980 (25 bp)
GTGGCCTCTTGAGATGCGGCGACAA
LOC_Os11g29480
Target Sequence 
CAGAGCGAATGAGCACGTTGTTCTTGCCGCTGGATGCCACATTCCAGGTGGCCAGCGACCGAAGGAGATAACCGGAGGAG
GGTGGCGCTCGGCGGGAGAGGCGTGCAGCGGTCGGCAGTGGCACTCACTGGCGGCAGCGGTGCTCGCTGGCGAAGACAAC
GATGCTGAGCCGATCAAAGATGAGGAAGCAGAGGCAGCGTTCGCTCACAAAGATGCCACGTGGATCCAGCACCGGATCTT
CCACTCCAGGACACCCTCAAGCCGAGGTGCTTGGGATGCGGTAGCAGGGACAGGTGACGGGGGATACGGTGGCCTCTTGA
GATGCGGCGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7248.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis