Browse Element(s) Details


OsAffx.19068.1.S1_x_at

Description tigr:9639.m02659
TID=OsAffx.19068.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protease inhibitorseed storageLTP family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2942011/11Protease inhibitor/seed storage/LTP family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29390Os.8307.1.A1_at8/1111+16551298..16558721Bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed
LOC_Os11g29400Os.15877.1.S1_at11/1111+16561667..165635566-phosphogluconate dehydrogenase, decarboxylating, putative, expressed
LOC_Os11g29400OsAffx.3069.1.S1_at1/1111+16561667..165635566-phosphogluconate dehydrogenase, decarboxylating, putative, expressed
LOC_Os11g29410OsAffx.19067.1.S1_at9/1111+16572053..16576363hypothetical protein
LOC_Os11g29410OsAffx.21120.1.S1_x_at1/1111+16572053..16576363hypothetical protein
LOC_Os11g29420OsAffx.19068.1.S1_x_at11/1111+16577495..16578663Protease inhibitor/seed storage/LTP family protein
LOC_Os11g29430OsAffx.31200.1.S1_at10/1111+16585193..16586282hypothetical protein
LOC_Os11g29440NANA11+16587250..16588695retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g29450OsAffx.20565.1.S1_at1/1111+16589821..16592736retrotransposon protein, putative, unclassified
LOC_Os11g29470Os.15237.1.S1_at1/1111+16595388..16597465expressed protein
LOC_Os11g29460OsAffx.31201.1.S1_at11/1111+16597398..16598142NA
LOC_Os11g29480OsAffx.7248.1.S1_at10/1111+16602640..16604041hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19068.1.S1_x_at--913--7191Chr11:16578591..16578615 (25 bp)
GTCGTCCTCCTGATCATCGCCATGG
LOC_Os11g29420
OsAffx.19068.1.S1_x_at--250--3931Chr11:16578533..16578557 (25 bp)
CGGCGGACAAGTGCGAGAAGGACCT
LOC_Os11g29420
OsAffx.19068.1.S1_x_at--1033--5591Chr11:16578528..16578552 (25 bp)
GACAAGTGCGAGAAGGACCTGGACC
LOC_Os11g29420
OsAffx.19068.1.S1_x_at--925--4071Chr11:16578520..16578544 (25 bp)
CGAGAAGGACCTGGACCTGCTGATG
LOC_Os11g29420
OsAffx.19068.1.S1_x_at--447--7291Chr11:16578403..16578427 (25 bp)
GTGCCTGTGCGGAATGGTGACGCCG
LOC_Os11g29420
OsAffx.19068.1.S1_x_at--1015--8651Chr11:16578398..16578422 (25 bp)
TGTGCGGAATGGTGACGCCGGAGGT
LOC_Os11g29420
OsAffx.19068.1.S1_x_at--515--8531Chr11:16578374..16578398 (25 bp)
TGGAGCAGTACGTGTGCATGGACAA
LOC_Os11g29420
OsAffx.19068.1.S1_x_at--476--3431Chr11:16578369..16578393 (25 bp)
CAGTACGTGTGCATGGACAAGGCCG
LOC_Os11g29420
OsAffx.19068.1.S1_x_at--430--9931Chr11:16578366..16578390 (25 bp)
TACGTGTGCATGGACAAGGCCGTCT
LOC_Os11g29420
OsAffx.19068.1.S1_x_at--779--1911Chr11:16578365..16578389 (25 bp)
ACGTGTGCATGGACAAGGCCGTCTA
LOC_Os11g29420
OsAffx.19068.1.S1_x_at--600--8671Chr11:16578362..16578386 (25 bp)
TGTGCATGGACAAGGCCGTCTACGT
LOC_Os11g29420
Target Sequence 
GTCGTCCTCCTGATCATCGCCATGGCCATGGCGGCGGCGGCGACGGTGTCGCCGTCGGCGGCGGACAAGTGCGAGAAGGA
CCTGGACCTGCTGATGGGGAGCTGCGAGGGGTACCTGCGGTTCCCGGCGGAGGCGAAGGCGGCGCCGTCGAGGGCGTGCT
GCGGCGCGGTGAGGAGGGTGGACGTGGGGTGCCTGTGCGGAATGGTGACGCCGGAGGTGGAGCAGTACGTGTGCATGGAC
AAGGCCGTCTACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19068.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis