Browse Element(s) Details


OsAffx.19067.1.S1_at

Description tigr:9639.m02658
TID=OsAffx.19067.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g294109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29380Os.12974.1.S1_at11/1111+16544222..16550186DNA replication licensing factor MCM2, putative, expressed
LOC_Os11g29390Os.8307.1.A1_at8/1111+16551298..16558721Bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed
LOC_Os11g29400Os.15877.1.S1_at11/1111+16561667..165635566-phosphogluconate dehydrogenase, decarboxylating, putative, expressed
LOC_Os11g29400OsAffx.3069.1.S1_at1/1111+16561667..165635566-phosphogluconate dehydrogenase, decarboxylating, putative, expressed
LOC_Os11g29410OsAffx.19067.1.S1_at9/1111+16572053..16576363hypothetical protein
LOC_Os11g29410OsAffx.21120.1.S1_x_at1/1111+16572053..16576363hypothetical protein
LOC_Os11g29420OsAffx.19068.1.S1_x_at11/1111+16577495..16578663Protease inhibitor/seed storage/LTP family protein
LOC_Os11g29430OsAffx.31200.1.S1_at10/1111+16585193..16586282hypothetical protein
LOC_Os11g29440NANA11+16587250..16588695retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g29450OsAffx.20565.1.S1_at1/1111+16589821..16592736retrotransposon protein, putative, unclassified
LOC_Os11g29470Os.15237.1.S1_at1/1111+16595388..16597465expressed protein
LOC_Os11g29460OsAffx.31201.1.S1_at11/1111+16597398..16598142NA

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19067.1.S1_at--322--2011Chr11:16576295..16576319 (25 bp)
ACTCTCTGGTGAAGGCAGCGCTCCA
LOC_Os11g29410
OsAffx.19067.1.S1_at--1048--3951Chr11:16576233..16576257 (25 bp)
CGGAGACAACGCTCGGCGGCATCTG
LOC_Os11g29410
OsAffx.19067.1.S1_at--155--8131Chr11:16576175..16576199 (25 bp)
GGACTCATGGCGTGGCACCGAGCTC
LOC_Os11g29410
OsAffx.19067.1.S1_at--516--5091NONE
GCACCGAGCTCCGAAACGCTAAAGA
NONE
OsAffx.19067.1.S1_at--921--5371Chr11:16574704..16574728 (25 bp)
GAAGCACATCAGAGTCGACAACCCT
LOC_Os11g29410
OsAffx.19067.1.S1_at--240--6111Chr11:16574693..16574717 (25 bp)
GAGTCGACAACCCTGTTACAGCACT
LOC_Os11g29410
OsAffx.19067.1.S1_at--106--1811NONE
ACCCTGTTACAGCACTTATTTCTAA
NONE
OsAffx.19067.1.S1_at--836--191Chr11:16572813..16572837 (25 bp)
ATTTCTAATTGCTATCTGCACCTTA
LOC_Os11g29410
OsAffx.19067.1.S1_at--71--9011Chr11:16572797..16572821 (25 bp)
TGCACCTTATTAAAGTTGCCACTAA
LOC_Os11g29410
OsAffx.19067.1.S1_at--433--5171Chr11:16572160..16572184 (25 bp)
GCAAGACATCAGTGGTACGCTAATA
LOC_Os11g29410
OsAffx.19067.1.S1_at--695--10091Chr11:16572089..16572113 (25 bp)
TATGGCCAAAAATCGCATGCACGCG
LOC_Os11g29410
Target Sequence 
ACTCTCTGGTGAAGGCAGCGCTCCATCGCGTCGTGGGTGCGCTCCGGCGCGGCGGCATTCGGCGGAGACAACGCTCGGCG
GCATCTGCGAGTGGCAGCACTGGCATGAGGAGACAGAGGCGGACTCATGGCGTGGCACCGAGCTCCGAAACGCTAAAGAT
ACATGGATGAGAACCACAAAAGAGGTGAAGCACATCAGAGTCGACAACCCTGTTACAGCACTTATTTCTAATTGCTATCT
GCACCTTATTAAAGTTGCCACTAAGAAGGGGACAAAGAAAAAGGATCAGGAAGGAATAGCAAGACATCAGTGGTACGCTA
ATATATTAGTGAATTATTATGCAAAGTTGCTGAAAAATCACATGGTTATTATGGCCAAAAATCGCATGCACGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19067.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis