Browse Element(s) Details


Os.12974.1.S1_at

Description gb:AK121422.1
DB_XREF= gi:37991045
TID=Os.12974.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12974 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023133N01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023133N01, full insert sequence.
FL= gb:AK121422.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2938011/11DNA replication licensing factor MCM2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29350Os.24759.1.A1_at10/1111+16525649..16529877phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os11g29360OsAffx.7247.1.S1_at11/1111+16530025..16531461pentatricopeptide repeat-containing protein, putative
LOC_Os11g29370Os.11937.1.S1_at11/1111+16534164..16541435haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g29370Os.21038.1.S1_s_at1/1111+16534164..16541435haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g29370OsAffx.28452.1.S1_x_at1/1111+16534164..16541435haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g29380Os.12974.1.S1_at11/1111+16544222..16550186DNA replication licensing factor MCM2, putative, expressed
LOC_Os11g29390Os.8307.1.A1_at8/1111+16551298..16558721Bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed
LOC_Os11g29400Os.15877.1.S1_at11/1111+16561667..165635566-phosphogluconate dehydrogenase, decarboxylating, putative, expressed
LOC_Os11g29400OsAffx.3069.1.S1_at1/1111+16561667..165635566-phosphogluconate dehydrogenase, decarboxylating, putative, expressed
LOC_Os11g29410OsAffx.19067.1.S1_at9/1111+16572053..16576363hypothetical protein
LOC_Os11g29410OsAffx.21120.1.S1_x_at1/1111+16572053..16576363hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006270biological_processDNA replication initiation
GO:0010182biological_processsugar mediated signaling
GO:0003677molecular_functionDNA binding
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12974.1.S1_at--653--4271Chr11:16549615..16549639 (25 bp)
CCTGGTCAAGGATGTGCTGCACTTC
LOC_Os11g29380
Os.12974.1.S1_at--25--3051Chr11:16549645..16549669 (25 bp)
AATCGTTTCAGGACCAACGACGCGC
LOC_Os11g29380
Os.12974.1.S1_at--85--4571Chr11:16549666..16549690 (25 bp)
GCGCCTGACTCACATCGAGGTTAAA
LOC_Os11g29380
Os.12974.1.S1_at--381--3211Chr11:16549823..16549845 (23 bp)
CAAGGCCCAGGAGTACGAAATCTAT
LOC_Os11g29380
Os.12974.1.S1_at--226--3071Chr11:16549839..16549863 (25 bp)
AATCTATGACCTGAGACCGTTCTTC
LOC_Os11g29380
Os.12974.1.S1_at--758--4131Chr11:16549871..16549895 (25 bp)
CCCACTTCAGGGACAACAACTTCGT
LOC_Os11g29380
Os.12974.1.S1_at--760--5351Chr11:16549947..16549971 (25 bp)
GAAGATCATCTGTGACCCATCTGAC
LOC_Os11g29380
Os.12974.1.S1_at--829--5911Chr11:16549984..16550008 (25 bp)
GAGCTACCTCATGGGATTATCAGAC
LOC_Os11g29380
Os.12974.1.S1_at--460--851Chr11:16550025..16550049 (25 bp)
ATGGCAACTCCTTTGTGCTTTTTAG
LOC_Os11g29380
Os.12974.1.S1_at--652--5731Chr11:16550051..16550075 (25 bp)
GACTGTTGCATGTTATCCAGCTGCA
LOC_Os11g29380
Os.12974.1.S1_at--276--6991Chr11:16550088..16550112 (25 bp)
GTACCGTGTGTACTTTCTTAACATT
LOC_Os11g29380
Target Sequence 
CCTGGTCAAGGATGTGCTGCACTTCGAAGAAATCGTTTCAGGACCAACGACGCGCCTGACTCACATCGAGGTTAAAGTAG
AGGACCTGAAGAACAAGGCCCAGGAGTACGAAATCTATGACCTGAGACCGTTCTTCTCCAGCGCCCACTTCAGGGACAAC
AACTTCGTCCTCGACGAAGGGCGGGGGATCATCAGGCACCCTCTTGCTGCCTAACTACAGAAGATCATCTGTGACCCATC
TGACAATGAACAATTTGAGCTACCTCATGGGATTATCAGACATAGTGTAATCATCAAATGGCAACTCCTTTGTGCTTTTT
AGAGACTGTTGCATGTTATCCAGCTGCATTTGGATAGGGTGTACCGTGTGTACTTTCTTAACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12974.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis