Browse Element(s) Details

Os.24759.1.A1_at

Description

gb:AK070344.1
DB_XREF= gi:32980368
TID=Os.24759.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24759 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023051L23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023051L23, full insert sequence.
FL= gb:AK070344.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os11g29350	10/11	phagocytosis and cell motility protein ELMO1, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os11g29320	OsAffx.442.1.S1_x_at	4/11	11	+	16498955..16502054	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g29320	OsAffx.442.1.S1_at	2/11	11	+	16498955..16502054	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g29320	OsAffx.30226.2.S1_x_at	1/11	11	+	16498955..16502054	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g29330	OsAffx.19066.1.S1_at	11/11	11	+	16505327..16505782	hypothetical protein
LOC_Os11g29340	Os.49189.1.S1_at	10/11	11	+	16507642..16513433	SAP domain containing protein, expressed
LOC_Os11g29340	Os.16167.1.S1_at	3/11	11	+	16507642..16513433	SAP domain containing protein, expressed
LOC_Os11g29350	Os.24759.1.A1_at	10/11	11	+	16525649..16529877	phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os11g29360	OsAffx.7247.1.S1_at	11/11	11	+	16530025..16531461	pentatricopeptide repeat-containing protein, putative
LOC_Os11g29370	Os.11937.1.S1_at	11/11	11	+	16534164..16541435	haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g29370	Os.21038.1.S1_s_at	1/11	11	+	16534164..16541435	haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g29370	OsAffx.28452.1.S1_x_at	1/11	11	+	16534164..16541435	haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g29380	Os.12974.1.S1_at	11/11	11	+	16544222..16550186	DNA replication licensing factor MCM2, putative, expressed
LOC_Os11g29390	Os.8307.1.A1_at	8/11	11	+	16551298..16558721	Bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.24759.1.A1_at--1008--399	1	Chr11:16529146..16529170 (25 bp)	CGTTTGTTCGAGCTGTTTTTATCCA	LOC_Os11g29350
Os.24759.1.A1_at--418--465	1	Chr11:16529298..16529322 (25 bp)	GCGTCGCGTTCGTTGTTATGGACAA	LOC_Os11g29350
Os.24759.1.A1_at--374--545	1	Chr11:16529338..16529362 (25 bp)	GAACGCCTCCTACATGGACTTCAAT	LOC_Os11g29350
Os.24759.1.A1_at--679--537	1	Chr11:16529521..16529545 (25 bp)	GAAGACATGCCGTCATACAGCCTGC	LOC_Os11g29350
Os.24759.1.A1_at--166--321	1	Chr11:16529589..16529613 (25 bp)	CAATGGTTCTGACCTCTGAGTGTAT	LOC_Os11g29350
Os.24759.1.A1_at--1101--295	1	Chr11:16529669..16529693 (25 bp)	AATGGCCTCCTATTGTCATGCTGAA	LOC_Os11g29350
Os.24759.1.A1_at--1036--61	1	Chr11:16529686..16529710 (25 bp)	ATGCTGAACTTGTCCCACTGTAAAC	LOC_Os11g29350
Os.24759.1.A1_at--389--705	1	Chr11:16529705..16529729 (25 bp)	GTAAACAACTCATCTGGGCATCACC	LOC_Os11g29350
Os.24759.1.A1_at--933--305	1	Chr11:16529774..16529798 (25 bp)	AATCTGTCATATTTTACCCCATGGA	LOC_Os11g29350
Os.24759.1.A1_at--110--227	1	Chr11:16529826..16529850 (25 bp)	AAATCAACTTGCAACCTCTGGTGAA	LOC_Os11g29350
Os.24759.1.A1_at--1131--773	1	NONE	GGTGTTCAATGGATCCTCATTTCCT	NONE

Target Sequence

CGTTTGTTCGAGCTGTTTTTATCCAAATGCTGTCAGAGGATGAGTGGGCATTTGATCTCCTNTANTGCGTCGCGTTCGTT
GTTATGGACAAGCAGTGGCTCGACAAGAACGCCTCCTACATGGACTTCAATGAGATACTGAAGTCGACACGGACACAGCT
GGAGAGGGAGCTTCTGCTGGATGATGTGATGCGGATCGAAGACATGCCGTCATACAGCCTGCTNTGCTAGTAGTGGCCAT
ACTGGTTGAACAATCATGATTGAGTCAATGGTTCTGACCTCTGAGTGTATAGCCCCCTCCCTTTTGTTGATTCCAGGGAA
GGGAATTTTTGATGGCATGTAGAGCAATGGCCTCCTATTGTCATGCTGAACTTGTCCCACTGTAAACAACTCATCTGGGC
ATCACCNCAATGAATTAGAATTGCTAGCATCCAATGTCAAAGCTGGTGTTAATCTGTCATATTTTACCCCATGGATGTAA
CAACAGAATCAACGAGTGGGTAAAATCAACTTGCAACCTCTGGTGAATGGTGTTCAATGGATCCTCATTTCCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis