Browse Element(s) Details


OsAffx.19066.1.S1_at

Description tigr:9639.m02651
TID=OsAffx.19066.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2933011/11hypothetical protein
LOC_Os08g086401/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g111501/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29290OsAffx.7246.1.S1_x_at11/1111+16482703..16484521Cytochrome P450 family protein, expressed
LOC_Os11g29300OsAffx.3620.1.S1_at1/1111+16488754..16489495hypothetical protein
LOC_Os11g29309NANA11+16497812..16498119NA
LOC_Os11g29320OsAffx.442.1.S1_x_at4/1111+16498955..16502054retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g29320OsAffx.442.1.S1_at2/1111+16498955..16502054retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g29320OsAffx.30226.2.S1_x_at1/1111+16498955..16502054retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g29330OsAffx.19066.1.S1_at11/1111+16505327..16505782hypothetical protein
LOC_Os11g29340Os.49189.1.S1_at10/1111+16507642..16513433SAP domain containing protein, expressed
LOC_Os11g29340Os.16167.1.S1_at3/1111+16507642..16513433SAP domain containing protein, expressed
LOC_Os11g29350Os.24759.1.A1_at10/1111+16525649..16529877phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os11g29360OsAffx.7247.1.S1_at11/1111+16530025..16531461pentatricopeptide repeat-containing protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19066.1.S1_at--6--6611Chr11:16505590..16505614 (25 bp)
GATTGTAAGGTTCTGTCGTTGATTC
LOC_Os11g29330
OsAffx.19066.1.S1_at--1037--8731Chr11:16505587..16505611 (25 bp)
TGTAAGGTTCTGTCGTTGATTCAAC
LOC_Os11g29330
OsAffx.19066.1.S1_at--915--8791Chr11:16505532..16505556 (25 bp)
TGTTGCAGGAACGAACTGCTGTAGA
LOC_Os11g29330
OsAffx.19066.1.S1_at--133--5451Chr11:16505524..16505548 (25 bp)
GAACGAACTGCTGTAGAACTTTGGC
LOC_Os11g29330
OsAffx.19066.1.S1_at--313--8493Chr04:6042359..6042380 (22 bp)
TGGCTCAAACTAGAATCGATCTATG
LOC_Os04g11150
OsAffx.19066.1.S1_at--768--511Chr11:16505489..16505513 (25 bp)
ATCGATCTATGGATCTAAGGATCTA
LOC_Os11g29330
OsAffx.19066.1.S1_at--912--5351Chr11:16505447..16505471 (25 bp)
GAAGATGAAGTTATTCTCGCAGAAG
LOC_Os11g29330
OsAffx.19066.1.S1_at--371--10591Chr11:16505434..16505458 (25 bp)
TTCTCGCAGAAGTTACAGAAGACTG
LOC_Os11g29330
OsAffx.19066.1.S1_at--193--2771Chr11:16505416..16505440 (25 bp)
AAGACTGGTTTAGTGTTGAACCACA
LOC_Os11g29330
OsAffx.19066.1.S1_at--543--7811Chr11:16505387..16505411 (25 bp)
GGTCTTCAAGGAGATTGTTGCCAAC
LOC_Os11g29330
OsAffx.19066.1.S1_at--652--2911Chr11:16505380..16505404 (25 bp)
AAGGAGATTGTTGCCAACCTAGTGT
LOC_Os11g29330
Target Sequence 
GATTGTAAGGTTCTGTCGTTGATTCAACTTCATCTATGTAATGATATTTTGCAAGAAGTGTTGCAGGAACGAACTGCTGT
AGAACTTTGGCTCAAACTAGAATCGATCTATGGATCTAAGGATCTAACCAGTAAGAGGCATATGAAGATGAAGTTATTCT
CGCAGAAGTTACAGAAGACTGGTTTAGTGTTGAACCACATATCGGTCTTCAAGGAGATTGTTGCCAACCTAGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19066.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis