Browse Element(s) Details


OsAffx.7246.1.S1_x_at

Description tigr:9639.m02648
TID=OsAffx.7246.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2929011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29260NANA11+16468056..16468469hypothetical protein
LOC_Os11g29274OsAffx.7245.1.S1_x_at5/1111+16469884..16472537hypothetical protein
LOC_Os11g29274OsAffx.2609.2.S1_x_at4/1111+16469884..16472537hypothetical protein
LOC_Os11g29274OsAffx.7245.1.S1_at3/1111+16469884..16472537hypothetical protein
LOC_Os11g29274OsAffx.2609.2.S1_at3/1111+16469884..16472537hypothetical protein
LOC_Os11g29290OsAffx.7246.1.S1_x_at11/1111+16482703..16484521Cytochrome P450 family protein, expressed
LOC_Os11g29300OsAffx.3620.1.S1_at1/1111+16488754..16489495hypothetical protein
LOC_Os11g29309NANA11+16497812..16498119NA
LOC_Os11g29320OsAffx.442.1.S1_x_at4/1111+16498955..16502054retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g29320OsAffx.442.1.S1_at2/1111+16498955..16502054retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g29320OsAffx.30226.2.S1_x_at1/1111+16498955..16502054retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g29330OsAffx.19066.1.S1_at11/1111+16505327..16505782hypothetical protein
LOC_Os11g29340Os.49189.1.S1_at10/1111+16507642..16513433SAP domain containing protein, expressed
LOC_Os11g29340Os.16167.1.S1_at3/1111+16507642..16513433SAP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7246.1.S1_x_at--831--1851Chr11:16483962..16483986 (25 bp)
ACGACTACCGGAGGATGCGCGTCCT
LOC_Os11g29290
OsAffx.7246.1.S1_x_at--201--2031Chr11:16483965..16483989 (25 bp)
ACTACCGGAGGATGCGCGTCCTCCA
LOC_Os11g29290
OsAffx.7246.1.S1_x_at--241--6171Chr11:16483972..16483996 (25 bp)
GAGGATGCGCGTCCTCCACGCGGCG
LOC_Os11g29290
OsAffx.7246.1.S1_x_at--904--7071Chr11:16484102..16484126 (25 bp)
GTCACCTACTTCCAGTACGGGATGG
LOC_Os11g29290
OsAffx.7246.1.S1_x_at--193--5691Chr11:16484162..16484186 (25 bp)
GACTTCAGCCTCGACAGGTGGCTCT
LOC_Os11g29290
OsAffx.7246.1.S1_x_at--693--2051Chr11:16484163..16484187 (25 bp)
ACTTCAGCCTCGACAGGTGGCTCTC
LOC_Os11g29290
OsAffx.7246.1.S1_x_at--966--851Chr11:16484312..16484336 (25 bp)
ATGGCGTTCGTCCAGATGAAGTTCG
LOC_Os11g29290
OsAffx.7246.1.S1_x_at--306--4031Chr11:16484397..16484421 (25 bp)
CGTTCGTGCCGCTCATGACGGCTCA
LOC_Os11g29290
OsAffx.7246.1.S1_x_at--521--7291Chr11:16484402..16484426 (25 bp)
GTGCCGCTCATGACGGCTCACATGG
LOC_Os11g29290
OsAffx.7246.1.S1_x_at--879--4131Chr11:16484406..16484430 (25 bp)
CGCTCATGACGGCTCACATGGCCGG
LOC_Os11g29290
OsAffx.7246.1.S1_x_at--489--8351Chr11:16484429..16484453 (25 bp)
GGCGGCCTCAACGTGACGGTGCGGC
LOC_Os11g29290
Target Sequence 
ACGACTACCGGAGGATGCGCGTCCTCCACGCGGCGCTGTGCGAGACGATGCGGCTGTACCCGCCGGTGGCGTGGGACTCG
AAGCATGCGGCGGCGGACGACGTGCTCCCCGACGGCACGGCGGTGGGGCGCGGCGACCGCGTCACCTACTTCCAGTACGG
GATGGGGAGGATGGAGGCCATCTGGGGCGCCGACGCCGCCGACTTCAGCCTCGACAGGTGGCTCTCCCTCCCGCGCGGCG
GCGGCGACGGCGCCGCCGCCGCCTCGCCAGCCGCCGCTGCGTTCGCCGGCGTGTCGCCGTTCAAGTACCCGGTGTTCCAG
GGCGGGCCGAGGACGTGCCTCGGCAAGGAGATGGCGTTCGTCCAGATGAAGTTCGTCGCCAGCGCCGTGCTCCGCCGCTT
CGAGCTCCGCCCCGTCGACGAGGGCCGCACGCCGGCGTTCGTGCCGCTCATGACGGCTCACATGGCCGGCGGCCTCAACG
TGACGGTGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7246.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis