Browse Element(s) Details


OsAffx.2609.2.S1_x_at

Description tigr:9630.m01372
TID=OsAffx.2609.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g292744/11hypothetical protein
LOC_Os12g114103/11retrotransposon protein, putative, LINE subclass
LOC_Os07g302201/11expressed protein
LOC_Os05g200101/11hypothetical protein
LOC_Os08g037101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29230Os.51222.1.S1_at11/1111+16441796..16444996PPR986-12, putative, expressed
LOC_Os11g29240Os.53967.1.S1_at10/1111+16448568..16452099expressed protein
LOC_Os11g29250OsAffx.7244.1.S1_at11/1111+16455940..16457656hypothetical protein
LOC_Os11g29260NANA11+16468056..16468469hypothetical protein
LOC_Os11g29274OsAffx.7245.1.S1_x_at5/1111+16469884..16472537hypothetical protein
LOC_Os11g29274OsAffx.2609.2.S1_x_at4/1111+16469884..16472537hypothetical protein
LOC_Os11g29274OsAffx.7245.1.S1_at3/1111+16469884..16472537hypothetical protein
LOC_Os11g29274OsAffx.2609.2.S1_at3/1111+16469884..16472537hypothetical protein
LOC_Os11g29290OsAffx.7246.1.S1_x_at11/1111+16482703..16484521Cytochrome P450 family protein, expressed
LOC_Os11g29300OsAffx.3620.1.S1_at1/1111+16488754..16489495hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2609.2.S1_x_at--832--83314Chr11:16469951..16469975 (25 bp)
GGCTGTCGACGATGGTACCTATGGC
LOC_Os11g29274
OsAffx.2609.2.S1_x_at--835--391Chr02:8134248..8134272 (25 bp)
ATCATCCGGCCGACGGTACATCGGC
NONE
OsAffx.2609.2.S1_x_at--643--4691Chr02:8134309..8134333 (25 bp)
GCGGCAGGAAATGAGGAGTCCGGGT
NONE
OsAffx.2609.2.S1_x_at--411--10872Chr11:3234642..3234666 (25 bp)
TTGGCCGAATCGTTGAAGGGACAAT
NONE
OsAffx.2609.2.S1_x_at--400--88117Chr11:16470146..16470170 (25 bp)
TGTTGACCGACGACGATCCTTCTTG
LOC_Os11g29274
OsAffx.2609.2.S1_x_at--318--107517Chr11:16470148..16470172 (25 bp)
TTGACCGACGACGATCCTTCTTGTG
LOC_Os11g29274
OsAffx.2609.2.S1_x_at--1004--63522Chr11:16470160..16470184 (25 bp)
GATCCTTCTTGTGCGGATTGGTGGT
LOC_Os11g29274
OsAffx.2609.2.S1_x_at--608--4491Chr02:8134478..8134502 (25 bp)
GCCGAGCCATTTGACCGGCTGACAA
NONE
OsAffx.2609.2.S1_x_at--92--4331Chr02:8134531..8134555 (25 bp)
CCTTGGACGCGTTGTTTTTGCATAC
NONE
OsAffx.2609.2.S1_x_at--941--10851Chr02:8134533..8134557 (25 bp)
TTGGACGCGTTGTTTTTGCATACCC
NONE
OsAffx.2609.2.S1_x_at--220--8531Chr02:8134534..8134558 (25 bp)
TGGACGCGTTGTTTTTGCATACCCC
NONE
Target Sequence 
GGCTGTCGACGATGGTACCTATGGCGGCGATGGTTGAAGGCCATCATCCGGCCGACGGTACATCGGCGGCGGCGGCGGTA
TGTGGAGGCGGGGAAGGGGTCTGGCGGCAGGAAATGAGGAGTCCGGGTGCGGGCGCGCCGTCGACGGCGGGAACAATTGT
GGGCGGTGGCCTTGGCCGAATCGTTGAAGGGACAATGTTGTTGACCGACGACGATCCTTCTTGTGCGGATTGGTGGTGTG
GGTTTGGACAGGGAATCGCGGGCGAAAGCCTTGCCGAGCCATTTGACCGGCTGACAACGGCGACGCCGTTTGGCATCGTT
CCCCTCCTTGGACGCGTTGTTTTTGCATACCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2609.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis