Browse Element(s) Details


OsAffx.2609.2.S1_at

Description tigr:9630.m01372
TID=OsAffx.2609.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g114103/11retrotransposon protein, putative, LINE subclass
LOC_Os11g292743/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g11360NANA12+6133453..6133839hypothetical protein
LOC_Os12g11370OsAffx.31701.1.S1_at11/1112+6137645..6140801Leucine Rich Repeat family protein, expressed
LOC_Os12g11370Os.7688.2.S1_x_at1/1112+6137645..6140801Leucine Rich Repeat family protein, expressed
LOC_Os12g11380Os.45976.1.S1_x_at3/1112+6146118..6149469transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11390NANA12+6153387..6154129NA
LOC_Os12g11400OsAffx.31702.1.S1_at11/1112+6155223..6155552hypothetical protein
LOC_Os12g11410OsAffx.2609.2.S1_x_at3/1112+6156147..6158853retrotransposon protein, putative, LINE subclass
LOC_Os12g11410OsAffx.2609.2.S1_at3/1112+6156147..6158853retrotransposon protein, putative, LINE subclass
LOC_Os12g11410OsAffx.9194.2.S1_at1/1112+6156147..6158853retrotransposon protein, putative, LINE subclass
LOC_Os12g11420NANA12+6163326..6163544hypothetical protein
LOC_Os12g11430Os.2358.1.S1_at3/1112+6173335..6178613hypothetical protein
LOC_Os12g11430Os.40360.1.S1_x_at1/1112+6173335..6178613hypothetical protein
LOC_Os12g11440OsAffx.7555.1.S1_at10/1112+6182914..6184609hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2609.2.S1_at--834--391Chr02:8134248..8134272 (25 bp)
ATCATCCGGCCGACGGTACATCGGC
NONE
OsAffx.2609.2.S1_at--1010--9591Chr02:8134249..8134273 (25 bp)
TCATCCGGCCGACGGTACATCGGCG
NONE
OsAffx.2609.2.S1_at--200--551Chr02:8134251..8134275 (25 bp)
ATCCGGCCGACGGTACATCGGCGGC
NONE
OsAffx.2609.2.S1_at--644--4691Chr02:8134309..8134333 (25 bp)
GCGGCAGGAAATGAGGAGTCCGGGT
NONE
OsAffx.2609.2.S1_at--399--88117Chr11:16470146..16470170 (25 bp)
TGTTGACCGACGACGATCCTTCTTG
LOC_Os11g29274
OsAffx.2609.2.S1_at--437--66517Chr11:16470147..16470171 (25 bp)
GTTGACCGACGACGATCCTTCTTGT
LOC_Os11g29274
OsAffx.2609.2.S1_at--317--107517Chr11:16470148..16470172 (25 bp)
TTGACCGACGACGATCCTTCTTGTG
LOC_Os11g29274
OsAffx.2609.2.S1_at--91--4331Chr02:8134531..8134555 (25 bp)
CCTTGGACGCGTTGTTTTTGCATAC
NONE
OsAffx.2609.2.S1_at--525--3611Chr02:8134532..8134556 (25 bp)
CTTGGACGCGTTGTTTTTGCATACC
NONE
OsAffx.2609.2.S1_at--940--10851Chr02:8134533..8134557 (25 bp)
TTGGACGCGTTGTTTTTGCATACCC
NONE
OsAffx.2609.2.S1_at--221--8531Chr02:8134534..8134558 (25 bp)
TGGACGCGTTGTTTTTGCATACCCC
NONE
Target Sequence 
ATCATCCGGCCGACGGTACATCGGCGGCGGCGGCGGTATGTGGAGGCGGGGAAGGGGTCTGGCGGCAGGAAATGAGGAGT
CCGGGTGCGGGCGCGCCGTCGACGGCGGGAACAATTGTGGGCGGTGGCCTTGGCCGAATCGTTGAAGGGACAATGTTGTT
GACCGACGACGATCCTTCTTGTGCGGATTGGTGGTGTGGGTTTGGACAGGGAATCGCGGGCGAAAGCCTTGCCGAGCCAT
TTGACCGGCTGACAACGGCGACGCCGTTTGGCATCGTTCCCCTCCTTGGACGCGTTGTTTTTGCATACCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2609.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis