Browse Element(s) Details


OsAffx.31701.1.S1_at

Description tigr:9640.m01080
TID=OsAffx.31701.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1137011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g11340Os.46306.1.S1_x_at4/1112+6111643..6116727transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11350OsAffx.19612.1.S1_at11/1112+6118813..6120373hypothetical protein
LOC_Os12g11350OsAffx.4826.1.S1_at1/1112+6118813..6120373hypothetical protein
LOC_Os12g11360NANA12+6133453..6133839hypothetical protein
LOC_Os12g11370OsAffx.31701.1.S1_at11/1112+6137645..6140801Leucine Rich Repeat family protein, expressed
LOC_Os12g11370Os.7688.2.S1_x_at1/1112+6137645..6140801Leucine Rich Repeat family protein, expressed
LOC_Os12g11380Os.45976.1.S1_x_at3/1112+6146118..6149469transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11390NANA12+6153387..6154129NA
LOC_Os12g11400OsAffx.31702.1.S1_at11/1112+6155223..6155552hypothetical protein
LOC_Os12g11410OsAffx.2609.2.S1_x_at3/1112+6156147..6158853retrotransposon protein, putative, LINE subclass
LOC_Os12g11410OsAffx.2609.2.S1_at3/1112+6156147..6158853retrotransposon protein, putative, LINE subclass
LOC_Os12g11410OsAffx.9194.2.S1_at1/1112+6156147..6158853retrotransposon protein, putative, LINE subclass
LOC_Os12g11420NANA12+6163326..6163544hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31701.1.S1_at--1044--351Chr12:6138208..6138232 (25 bp)
ATAATGCATTCCATGGCACCATTCC
LOC_Os12g11370
OsAffx.31701.1.S1_at--598--1551Chr12:6138169..6138193 (25 bp)
AGCTTGTTCTGCTTCATGGGCTCAA
LOC_Os12g11370
OsAffx.31701.1.S1_at--334--2111Chr12:6138145..6138169 (25 bp)
ACATGTCTCACAATTCACTAACAGG
LOC_Os12g11370
OsAffx.31701.1.S1_at--1004--5831Chr12:6138074..6138098 (25 bp)
GACCTCTCCTCAAATGAGCTCTTTG
LOC_Os12g11370
OsAffx.31701.1.S1_at--422--2291Chr12:6138063..6138087 (25 bp)
AAATGAGCTCTTTGGTGAAATTCCC
LOC_Os12g11370
OsAffx.31701.1.S1_at--755--3571Chr12:6137947..6137971 (25 bp)
CATTTTCGAACAACTCTTTTCTTGG
LOC_Os12g11370
OsAffx.31701.1.S1_at--588--2371Chr12:6137922..6137946 (25 bp)
AAACACTGGTTTGTGTGGACCGCCA
LOC_Os12g11370
OsAffx.31701.1.S1_at--921--8651Chr12:6137909..6137933 (25 bp)
TGTGGACCGCCATTATCTAAACAAT
LOC_Os12g11370
OsAffx.31701.1.S1_at--866--7391Chr12:6137884..6137908 (25 bp)
GTGATAACCCACAAGAGTCAACTGT
LOC_Os12g11370
OsAffx.31701.1.S1_at--390--2571Chr12:6137865..6137889 (25 bp)
AACTGTGATGCCATATGTTTCGGAG
LOC_Os12g11370
OsAffx.31701.1.S1_at--630--10391Chr12:6137799..6137823 (25 bp)
TTTTGGTGTTTCCTTTGCAATTACA
LOC_Os12g11370
Target Sequence 
ATAATGCATTCCATGGCACCATTCCTGAGACTATCGGGGAGCTTGTTCTGCTTCATGGGCTCAACATGTCTCACAATTCA
CTAACAGGACCAATTCCAACTCAGTTTGGCAGGCTGAATCAACTTGAGTCACTGGACCTCTCCTCAAATGAGCTCTTTGG
TGAAATTCCCAAGGAGCTAGCATCACTCAACTTCCTTTCAATACTGAATTTGTCTTATAACACGTTGGTTGGAAGAATAC
CAAATTCATATCAGTTTTCCACATTTTCGAACAACTCTTTTCTTGGAAACACTGGTTTGTGTGGACCGCCATTATCTAAA
CAATGTGATAACCCACAAGAGTCAACTGTGATGCCATATGTTTCGGAGAAATCCATAGATGTTCTACTAGTCCTCTTCAC
TGCATTGGGTTTTGGTGTTTCCTTTGCAATTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31701.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis