Browse Element(s) Details


OsAffx.4826.1.S1_at

Description tigr:9634.m01321
TID=OsAffx.4826.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1330011/11hypothetical protein
LOC_Os12g113501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13250OsAffx.27607.1.S1_at11/116+7292012..7294139hypothetical protein
LOC_Os06g13250OsAffx.27607.2.S1_s_at11/116+7292012..7294139hypothetical protein
LOC_Os06g13260OsAffx.15404.1.S1_at11/116+7294292..7295555hypothetical protein
LOC_Os06g13270NANA6+7297666..7301171transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g13280OsAffx.27608.1.S1_at11/116+7305307..7306548O-methyltransferase ZRP4, putative
LOC_Os06g13290NANA6+7310746..7312078retrotransposon protein, putative, unclassified
LOC_Os06g13300OsAffx.4826.1.S1_at11/116+7314027..7316138hypothetical protein
LOC_Os06g13310OsAffx.15405.1.S1_at11/116+7317600..7322202SAM dependent carboxyl methyltransferase family protein
LOC_Os06g13320Os.52735.1.S1_at11/116+7324615..7326450Protein kinase domain containing protein, expressed
LOC_Os06g13320OsAffx.24030.1.S1_x_at4/116+7324615..7326450Protein kinase domain containing protein, expressed
LOC_Os06g13330Os.24485.1.A1_at2/116+7332279..7334742hypothetical protein
LOC_Os06g13340OsAffx.27609.1.S1_at10/116+7337077..7338728hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4826.1.S1_at--831--1771Chr06:7316063..7316087 (25 bp)
ACCGGCTTCGAGCAGTGTGGATTCT
LOC_Os06g13300
OsAffx.4826.1.S1_at--237--1111Chr06:7316050..7316074 (25 bp)
AGTGTGGATTCTTTGGCGGTGACAT
LOC_Os06g13300
OsAffx.4826.1.S1_at--942--7631Chr06:7315344..7315365 (22 bp)
GGGAGCCTCCCAAGTTCAGAGAAAG
LOC_Os06g13300
OsAffx.4826.1.S1_at--1113--1291Chr06:7314628..7314652 (25 bp)
AGAGTGTTGCGTCGAGTTACCGTCA
LOC_Os06g13300
OsAffx.4826.1.S1_at--150--7211Chr06:7314403..7314642 (25 bp)
GTCGAGTTACCGTCAAGATGTGCAA
LOC_Os06g13300
OsAffx.4826.1.S1_at--1014--73329Chr12:23501970..23501994 (25 bp)
GTGCAATATGGTTTCAATTTGGTTC
NONE
OsAffx.4826.1.S1_at--288--3171Chr06:7314370..7314394 (25 bp)
CAATTTGGTTCTCTATTTCCGGATT
LOC_Os06g13300
OsAffx.4826.1.S1_at--579--7871Chr06:7314364..7314388 (25 bp)
GGTTCTCTATTTCCGGATTCAATTA
LOC_Os06g13300
OsAffx.4826.1.S1_at--122--6574Chr08:19099702..19099724 (23 bp)
GATTCAATTATTCATGTTCCATGCG
NONE
OsAffx.4826.1.S1_at--326--132Chr08:19099709..19099728 (20 bp)
ATTCATGTTCCATGCGAGTCCTGGA
NONE
OsAffx.4826.1.S1_at--1065--4611Chr06:7314327..7314351 (25 bp)
GCGAGTCCTGGATGTGCTATCTGGC
LOC_Os06g13300
Target Sequence 
ACCGGCTTCGAGCAGTGTGGATTCTTTGGCGGTGACATGGGGAGCCTCCCAAGTTCAGAGAAAGGAAGAGCAGAGAAGGA
ACAGGGAGGACAGAGGTGTGGAGAGATCTGGAGTGGAGAGTGTTGCGTCGAGTTACCGTCAAGATGTGCAATATGGTTTC
AATTTGGTTCTCTATTTCCGGATTCAATTATTCATGTTCCATGCGAGTCCTGGATGTGCTATCTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4826.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis