Browse Element(s) Details


OsAffx.15404.1.S1_at

Description tigr:9630.m03562
TID=OsAffx.15404.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3723011/11hypothetical protein
LOC_Os06g1326011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37160Os.11252.1.S1_at11/112+22462319..22463919heavy metal-associated domain containing protein, expressed
LOC_Os02g37170OsAffx.2888.1.S1_at11/112+22465807..22466241hypothetical protein
LOC_Os02g37180Os.49112.1.S1_at9/112+22468765..22469820expressed protein
LOC_Os02g37190Os.7108.1.S1_at11/112+22471921..22473077expressed protein
LOC_Os02g37200Os.54430.1.S1_at2/112+22475779..22476610expressed protein
LOC_Os02g37210OsAffx.2889.1.S1_at11/112+22480288..22480518hypothetical protein
LOC_Os02g37220NANA2+22482259..22485830transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g37230OsAffx.15404.1.S1_at11/112+22487942..22489234hypothetical protein
LOC_Os02g37240OsAffx.27607.2.S1_s_at11/112+22489357..22494099hypothetical protein
LOC_Os02g37240OsAffx.27607.1.S1_at11/112+22489357..22494099hypothetical protein
LOC_Os02g37240OsAffx.24609.1.S1_at11/112+22489357..22494099hypothetical protein
LOC_Os02g37250Os.11315.1.S1_at11/112+22503680..22504738expressed protein
LOC_Os02g37250Os.20238.1.S1_s_at1/112+22503680..22504738expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15404.1.S1_at--712--5032Chr02:22488607..22488630 (24 bp)
GCAGTTCATCTGAGTCCATACGAAT
LOC_Os02g37230
OsAffx.15404.1.S1_at--892--972Chr02:22488673..22488697 (25 bp)
AGGAGCTTGGACTTCCTGATCGCTA
LOC_Os02g37230
OsAffx.15404.1.S1_at--894--4833Chr11:18153913..18153937 (25 bp)
GCTACACCCCAGTTTTGGAAGGCTA
NONE
OsAffx.15404.1.S1_at--1045--913Chr11:18153932..18153956 (25 bp)
AGGCTATGTTGGTGTTCATTCTGAC
NONE
OsAffx.15404.1.S1_at--494--10613Chr11:18153974..18153998 (25 bp)
TTCGGAGTCCGAGTATGATCCTTTA
NONE
OsAffx.15404.1.S1_at--752--7514Chr11:18154203..18154227 (25 bp)
GTGGAGTCAAGTTTCGGTCTCGCAA
NONE
OsAffx.15404.1.S1_at--421--2793Chr11:18154290..18154314 (25 bp)
AAGATGCAAGTCTCACACCAAGTGA
NONE
OsAffx.15404.1.S1_at--554--214Chr11:18154316..18154340 (25 bp)
ATTTGTATGCCAGCTACATCACAAG
NONE
OsAffx.15404.1.S1_at--175--2614Chr11:18154343..18154367 (25 bp)
AACGCTGGAGATCTCGATGGCAACT
NONE
OsAffx.15404.1.S1_at--732--10454Chr11:18154367..18154391 (25 bp)
TTAGATGACCACACACAGGCTGCTG
NONE
OsAffx.15404.1.S1_at--591--10754Chr11:18154392..18154416 (25 bp)
TTGAAGGCCAGTTCTACTGCCACAT
NONE
Target Sequence 
GCAGTTCATCTGAGTCCATACGAATTGGAGCGCCTAAAAGAATGCATGAAGAACAGTGCAAGGCTGAAGGAGCTTGGACT
TCCTGATCGCTACACCCCAGTTTTGGAAGGCTATGTTGGTGTTCATTCTGACCAGAATCAAAGTGGAGATTCGGAGTCCG
AGTATGATCCTTTAAAGGATGATACTGGTGAAGGAGATTTGATTGATGATGAGAATGCAAAGCAGTGCTCTAAGGAGAAG
ACTCGCAAGAACTGTAACAACAAAACTTCAAGNATCCAGACTGGTGGAGTCAAGTTTCGGTCTCGCAAGAGAGTTTATGC
AGAGCAAATGACTCCTAAAGTTACAAGGTCAAAGAAAAGCATTGCCCAACAAGATGCAAGTCTCACACCAAGTGATATTT
GTATGCCAGCTACATCACAAGCTAACGCTGGAGATCTCGATGGCAACTTAGATGACCACACACAGGCTGCTGTTGAAGGC
CAGTTCTACTGCCACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15404.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis